X-Git-Url: http://source.jalview.org/gitweb/?p=vamsas.git;a=blobdiff_plain;f=src%2Fuk%2Fac%2Fvamsas%2Fclient%2FAppDataOutputStream.java;h=eaaa7ef8a05c869b79fe7864f38e08221237e753;hp=5eb1ff3fbe812d49ee69100c6701159c7dd4af62;hb=844ccad5a3fcbedec17b2af66d460f31abc7cff1;hpb=6f33f705957d674dc2ab6c994a6ea87f7a91f40f

diff --git a/src/uk/ac/vamsas/client/AppDataOutputStream.java b/src/uk/ac/vamsas/client/AppDataOutputStream.java
index 5eb1ff3..eaaa7ef 100644
--- a/src/uk/ac/vamsas/client/AppDataOutputStream.java
+++ b/src/uk/ac/vamsas/client/AppDataOutputStream.java
@@ -1,86 +1,121 @@
-/**
- * 
- */
-package uk.ac.vamsas.client;
-
-import java.io.DataOutputStream;
-import java.io.IOException;
-import java.io.OutputStream;
-
-import org.apache.commons.logging.Log;
-import org.apache.commons.logging.LogFactory;
-
-/**
- * @author jimp
- *
- */
-public class AppDataOutputStream extends DataOutputStream {
-  private Log log = LogFactory.getLog(AppDataOutputStream.class);
-  private boolean isOpen=true;
-  /**
-   * @param out
-   */
-  public AppDataOutputStream(OutputStream out) {
-    super(out);
-    isOpen=true;
-  }
-  /* (non-Javadoc)
-   * @see java.io.DataOutputStream#flush()
-   */
-  public void flush() throws IOException {
-    if (isOpen)
-      super.flush();
-    else
-      log.warn("flush() called on closed AppDataOutputStream");
-  }
-  /* (non-Javadoc)
-   * @see java.io.DataOutputStream#write(byte[], int, int)
-   */
-  public synchronized void write(byte[] b, int off, int len) throws IOException {
-    if (isOpen) {
-      super.write(b, off, len);
-    } else {
-      log.debug("write(b,off,len) called on closed AppDataOutputStream");
-      throw new IOException("Attempt to write to closed AppDataOutputStream");
-    }
-  }
-  /* (non-Javadoc)
-   * @see java.io.DataOutputStream#write(int)
-   */
-  public synchronized void write(int b) throws IOException {
-    if (isOpen) {
-      super.write(b);
-    } else {
-      log.debug("write(b) called on closed AppDataOutputStream");
-      throw new IOException("Attempt to write to closed AppDataOutputStream");
-    }
-  }
-  /**
-   * Sets an internal flag preventing further write operations 
-   * to the AppData output stream and flushes any pending writes.
-   * @see java.io.FilterOutputStream#close()
-   */
-  public void close() throws IOException {
-    isOpen=false;
-    super.flush();
-    log.debug("AppDataOutputStream was closed.");
-  }
-  /* (non-Javadoc)
-   * @see java.io.FilterOutputStream#write(byte[])
-   */
-  public void write(byte[] b) throws IOException {
-    if (isOpen) {
-      super.write(b);
-    } else {
-      log.debug("write(b[]) called on closed AppDataOutputStream");
-      throw new IOException("Attempt to write to closed AppDataOutputStream");
-    }
-  }
-  /**
-   * @return true if stream is still Open.
-   */
-  public boolean isOpen() {
-    return isOpen;
-  }
-  
-}
+/*
+ * This file is part of the Vamsas Client version 0.1. 
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ *  Andrew Waterhouse and Dominik Lindner.
+ * 
+ * Earlier versions have also been incorporated into Jalview version 2.4 
+ * since 2008, and TOPALi version 2 since 2007.
+ * 
+ * The Vamsas Client is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *  
+ * The Vamsas Client is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+ */
+package uk.ac.vamsas.client;
+
+import java.io.DataOutputStream;
+import java.io.IOException;
+import java.io.OutputStream;
+
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+
+/**
+ * @author jimp
+ * 
+ */
+public class AppDataOutputStream extends DataOutputStream {
+  private Log log = LogFactory.getLog(AppDataOutputStream.class);
+
+  private boolean isOpen = true;
+
+  /**
+   * @param out
+   */
+  public AppDataOutputStream(OutputStream out) {
+    super(out);
+    isOpen = true;
+  }
+
+  /*
+   * (non-Javadoc)
+   * 
+   * @see java.io.DataOutputStream#flush()
+   */
+  public void flush() throws IOException {
+    if (isOpen)
+      super.flush();
+    else
+      log.warn("flush() called on closed AppDataOutputStream");
+  }
+
+  /*
+   * (non-Javadoc)
+   * 
+   * @see java.io.DataOutputStream#write(byte[], int, int)
+   */
+  public synchronized void write(byte[] b, int off, int len) throws IOException {
+    if (isOpen) {
+      super.write(b, off, len);
+    } else {
+      log.debug("write(b,off,len) called on closed AppDataOutputStream");
+      throw new IOException("Attempt to write to closed AppDataOutputStream");
+    }
+  }
+
+  /*
+   * (non-Javadoc)
+   * 
+   * @see java.io.DataOutputStream#write(int)
+   */
+  public synchronized void write(int b) throws IOException {
+    if (isOpen) {
+      super.write(b);
+    } else {
+      log.debug("write(b) called on closed AppDataOutputStream");
+      throw new IOException("Attempt to write to closed AppDataOutputStream");
+    }
+  }
+
+  /**
+   * Sets an internal flag preventing further write operations to the AppData
+   * output stream and flushes any pending writes.
+   * 
+   * @see java.io.FilterOutputStream#close()
+   */
+  public void close() throws IOException {
+    isOpen = false;
+    super.flush();
+    log.debug("AppDataOutputStream was closed.");
+  }
+
+  /*
+   * (non-Javadoc)
+   * 
+   * @see java.io.FilterOutputStream#write(byte[])
+   */
+  public void write(byte[] b) throws IOException {
+    if (isOpen) {
+      super.write(b);
+    } else {
+      log.debug("write(b[]) called on closed AppDataOutputStream");
+      throw new IOException("Attempt to write to closed AppDataOutputStream");
+    }
+  }
+
+  /**
+   * @return true if stream is still Open.
+   */
+  public boolean isOpen() {
+    return isOpen;
+  }
+
+}