source.jalview.org Git - vamsas.git/commit

git://source.jalview.org / vamsas.git / commit

author	jprocter <jprocter@compbio.dundee.ac.uk>
	Thu, 28 Jun 2007 13:51:44 +0000 (13:51 +0000)
committer	jprocter <jprocter@compbio.dundee.ac.uk>
	Thu, 28 Jun 2007 13:51:44 +0000 (13:51 +0000)
commit	1890f014c0a312a7a2203c878e4802e3eb914e47
tree	2a789665cf75ddc5b31f7fa8a3ac38d8c975519c	tree \| snapshot
parent	de558440c776d39285b02d970a21df7002e85a3c	commit \| diff

sequence mappings and DbRef mapping objects unified and source binding for castor-1.1-cycle-xml.jar dependency

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@407 be28352e-c001-0410-b1a7-c7978e42abec

91 files changed:

schemas/vamsas.xsd		diff \| blob \| history
src/uk/ac/vamsas/objects/EmptyDocumentUpdater.java		diff \| blob \| history
src/uk/ac/vamsas/objects/IDocumentUpdater.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/.castor.cdr		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Alignment.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/AlignmentAnnotation.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/AlignmentSequence.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/AlignmentSequenceAnnotation.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/AnnotationElement.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/AppData.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/ApplicationData.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Attachment.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/DataSet.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/DataSetAnnotations.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/DbRef.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Entry.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Glyph.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Input.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Instance.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Link.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Local.java	[new file with mode: 0644]	blob
src/uk/ac/vamsas/objects/core/LockFile.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Map.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/MapRangeType.java	[new file with mode: 0644]	blob
src/uk/ac/vamsas/objects/core/MapType.java	[new file with mode: 0644]	blob
src/uk/ac/vamsas/objects/core/Mapped.java	[new file with mode: 0644]	blob
src/uk/ac/vamsas/objects/core/Newick.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/NodeType.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Param.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Pos.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Property.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Provenance.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/RangeAnnotation.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/RangeType.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/ReferenceType.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Score.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Seg.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Sequence.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/SequenceMapping.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/SequenceType.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Tree.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Treenode.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/User.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/VAMSAS.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/VamsasDocument.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Vref.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/Vxref.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/AlignmentAnnotationDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/AlignmentDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/AlignmentSequenceAnnotationDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/AlignmentSequenceDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/AnnotationElementDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/AppDataDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/ApplicationDataDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/AttachmentDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/CommonDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/DataSetAnnotationsDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/DataSetDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/DbRefDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/EntryDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/GlyphDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/InputDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/InstanceDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/LinkDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/LocalDescriptor.java	[new file with mode: 0644]	blob
src/uk/ac/vamsas/objects/core/descriptors/LockFileDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/MapDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/MapRangeTypeDescriptor.java	[new file with mode: 0644]	blob
src/uk/ac/vamsas/objects/core/descriptors/MapTypeDescriptor.java	[new file with mode: 0644]	blob
src/uk/ac/vamsas/objects/core/descriptors/MappedDescriptor.java	[new file with mode: 0644]	blob
src/uk/ac/vamsas/objects/core/descriptors/NewickDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/NodeTypeDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/ParamDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/PosDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/PropertyDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/ProvenanceDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/RangeAnnotationDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/RangeTypeDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/ReferenceTypeDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/ScoreDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/SegDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/SequenceDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/SequenceMappingDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/SequenceTypeDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/TreeDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/TreenodeDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/UserDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/VAMSASDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/VamsasDocumentDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/VrefDescriptor.java		diff \| blob \| history
src/uk/ac/vamsas/objects/core/descriptors/VxrefDescriptor.java		diff \| blob \| history

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