schema changes: provenance-entry-date is now an xmlSchema:dateTime bound directly...
authorjprocter <jprocter@compbio.dundee.ac.uk>
Tue, 22 May 2007 15:16:26 +0000 (15:16 +0000)
committerjprocter <jprocter@compbio.dundee.ac.uk>
Tue, 22 May 2007 15:16:26 +0000 (15:16 +0000)
commiteae55a9d436c058b8f03036faa0a4baa930c2cd5
tree73b7f63de1c008fcd4b8a509d9df9fff63fd7d96
parentae13f473eb7580171784b6a3c8eb6e3afc5ef152
schema changes: provenance-entry-date is now an xmlSchema:dateTime bound directly to java.util.Date.  Sequence and alignment sequence associated annotation takes an array of object references. Trees have a nodeMapping object to map between entities in the tree representation and objects in the document. Dataset sequences have Vxrefs which are named references to one or more other document objects.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@402 be28352e-c001-0410-b1a7-c7978e42abec
27 files changed:
schemas/vamsas.xsd
src/uk/ac/vamsas/objects/core/.castor.cdr
src/uk/ac/vamsas/objects/core/AlignmentAnnotation.java
src/uk/ac/vamsas/objects/core/DataSetAnnotations.java
src/uk/ac/vamsas/objects/core/Entry.java
src/uk/ac/vamsas/objects/core/Input.java
src/uk/ac/vamsas/objects/core/NodeType.java [new file with mode: 0644]
src/uk/ac/vamsas/objects/core/ReferenceType.java [new file with mode: 0644]
src/uk/ac/vamsas/objects/core/Sequence.java
src/uk/ac/vamsas/objects/core/Tree.java
src/uk/ac/vamsas/objects/core/Treenode.java [new file with mode: 0644]
src/uk/ac/vamsas/objects/core/Vref.java [new file with mode: 0644]
src/uk/ac/vamsas/objects/core/Vxref.java [new file with mode: 0644]
src/uk/ac/vamsas/objects/core/descriptors/AlignmentAnnotationDescriptor.java
src/uk/ac/vamsas/objects/core/descriptors/DataSetAnnotationsDescriptor.java
src/uk/ac/vamsas/objects/core/descriptors/EntryDescriptor.java
src/uk/ac/vamsas/objects/core/descriptors/InputDescriptor.java
src/uk/ac/vamsas/objects/core/descriptors/NodeTypeDescriptor.java [new file with mode: 0644]
src/uk/ac/vamsas/objects/core/descriptors/ReferenceTypeDescriptor.java [new file with mode: 0644]
src/uk/ac/vamsas/objects/core/descriptors/SequenceDescriptor.java
src/uk/ac/vamsas/objects/core/descriptors/TreeDescriptor.java
src/uk/ac/vamsas/objects/core/descriptors/TreenodeDescriptor.java [new file with mode: 0644]
src/uk/ac/vamsas/objects/core/descriptors/VrefDescriptor.java [new file with mode: 0644]
src/uk/ac/vamsas/objects/core/descriptors/VxrefDescriptor.java [new file with mode: 0644]
src/uk/ac/vamsas/objects/utils/ProvenanceStuff.java
src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasClient.java
src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasDatastore.java