source.jalview.org Git - vamsas.git/log

jprocter [Thu, 14 Dec 2006 18:49:23 +0000 (18:49 +0000)]

refactoring org to uk - never use f**ng eclipse

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@293 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:49:07 +0000 (18:49 +0000)]

refactoring org to uk - never use f**ng eclipse

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@292 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:48:08 +0000 (18:48 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@291 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:47:51 +0000 (18:47 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@290 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:47:18 +0000 (18:47 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@289 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:43:00 +0000 (18:43 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@288 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:42:43 +0000 (18:42 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@287 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:41:20 +0000 (18:41 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@286 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:40:16 +0000 (18:40 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@285 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:39:48 +0000 (18:39 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@284 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:27:53 +0000 (18:27 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@283 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:27:16 +0000 (18:27 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@282 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:26:15 +0000 (18:26 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@281 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:20:51 +0000 (18:20 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@280 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:18:43 +0000 (18:18 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@279 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:18:26 +0000 (18:18 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@278 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:17:24 +0000 (18:17 +0000)]

refactoring org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@277 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:16:54 +0000 (18:16 +0000)]

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@276 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:16:15 +0000 (18:16 +0000)]

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@275 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:16:14 +0000 (18:16 +0000)]

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@274 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:08:11 +0000 (18:08 +0000)]

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@273 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 18:05:40 +0000 (18:05 +0000)]

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@272 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 17:54:15 +0000 (17:54 +0000)]

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@271 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 17:52:40 +0000 (17:52 +0000)]

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@270 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 17:52:15 +0000 (17:52 +0000)]

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@269 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 17:51:17 +0000 (17:51 +0000)]

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@268 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 17:50:39 +0000 (17:50 +0000)]

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@267 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 17:50:38 +0000 (17:50 +0000)]

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@266 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 17:44:21 +0000 (17:44 +0000)]

broken refactoring

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@265 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 17:42:54 +0000 (17:42 +0000)]

backtrack

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@264 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 17:15:29 +0000 (17:15 +0000)]

refactored from org.vamsas to uk.ac.vamsas

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@263 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 17:11:07 +0000 (17:11 +0000)]

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@262 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 17:08:32 +0000 (17:08 +0000)]

refactored from org.vamsas to uk.ac.vamsas

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@261 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 16:40:55 +0000 (16:40 +0000)]

remove old ebi packages

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@260 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 16:21:49 +0000 (16:21 +0000)]

quick commit before refactoring

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@259 be28352e-c001-0410-b1a7-c7978e42abec

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pmarguerite [Thu, 14 Dec 2006 16:19:27 +0000 (16:19 +0000)]

added SimpleClientFactory implementation and new class SessionsFile to deal with the list of active sessions

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@258 be28352e-c001-0410-b1a7-c7978e42abec

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imilne [Thu, 14 Dec 2006 16:15:36 +0000 (16:15 +0000)]

Updated docs and logging for the picking api.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@257 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 12:26:59 +0000 (12:26 +0000)]

modifiable attribute is now a string rather than a boolean. See 'locks' type documentation in vamsas.xsd

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@256 be28352e-c001-0410-b1a7-c7978e42abec

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imilne [Thu, 14 Dec 2006 11:56:17 +0000 (11:56 +0000)]

Picking code updated with full basic implementation of message sending and server restart code.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@255 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 14 Dec 2006 10:25:25 +0000 (10:25 +0000)]

refactored mapping to mapList type in both DbRef and SeqType object.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@254 be28352e-c001-0410-b1a7-c7978e42abec

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imilne [Wed, 13 Dec 2006 17:03:37 +0000 (17:03 +0000)]

First check-in of the picking api.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@253 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Wed, 13 Dec 2006 16:45:02 +0000 (16:45 +0000)]

IObjectUpdate interface introduction.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@252 be28352e-c001-0410-b1a7-c7978e42abec

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amwaterhouse [Wed, 13 Dec 2006 16:32:21 +0000 (16:32 +0000)]

Mapping element added

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@251 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Tue, 12 Dec 2006 23:52:36 +0000 (23:52 +0000)]

first round of todos for codefest

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@250 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Tue, 12 Dec 2006 23:49:50 +0000 (23:49 +0000)]

basic ideas for per-object update interface

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@249 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Tue, 12 Dec 2006 23:43:21 +0000 (23:43 +0000)]

added todo for making library automatically construct the user handle

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@248 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Tue, 12 Dec 2006 11:02:13 +0000 (11:02 +0000)]

new stuff for vamsas hack.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@247 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Sun, 17 Sep 2006 14:42:32 +0000 (14:42 +0000)]

show vamsasId for aligments.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@246 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Sun, 17 Sep 2006 14:42:13 +0000 (14:42 +0000)]

tidier file locks - lock file is removed on JVM exit.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@245 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Sun, 17 Sep 2006 14:41:31 +0000 (14:41 +0000)]

ensured that hash binding vorbaIds is passed to client document object for vorba object lookup methods.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@244 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Wed, 13 Sep 2006 14:25:32 +0000 (14:25 +0000)]

jalview'esque vamsas session example for org.vamsas.test.simpleclient.ArchiveClient test model.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@243 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Wed, 13 Sep 2006 14:24:57 +0000 (14:24 +0000)]

bug fix to ensure valid and vorbaIds are generated and stored in vamsas object model

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@242 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Tue, 12 Sep 2006 10:20:55 +0000 (10:20 +0000)]

objects regenerated with valid schema (without excess id field cancelled in previous commit)

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@241 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Tue, 12 Sep 2006 10:19:48 +0000 (10:19 +0000)]

removed excess id field (cancels previous commit)

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@240 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Tue, 12 Sep 2006 10:07:11 +0000 (10:07 +0000)]

bugfixed org.vamsas.test.simpleclient.ArchiveClient and made VorbaId mechanism more rigorous.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@239 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Tue, 12 Sep 2006 10:04:04 +0000 (10:04 +0000)]

added id for RangeAnnotation types.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@238 be28352e-c001-0410-b1a7-c7978e42abec

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imilne [Fri, 8 Sep 2006 12:12:01 +0000 (12:12 +0000)]

Added a javadoc Ant build task.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@237 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Wed, 6 Sep 2006 13:43:37 +0000 (13:43 +0000)]

added V_parent reference to parent object in document.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@236 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Tue, 5 Sep 2006 09:50:42 +0000 (09:50 +0000)]

enum constants for Glyph types.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@235 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Fri, 1 Sep 2006 17:02:21 +0000 (17:02 +0000)]

updated test cases for spring 2006 schema, and major debug of locking system

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@234 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Fri, 1 Sep 2006 17:01:10 +0000 (17:01 +0000)]

added some example logging configs

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@233 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Fri, 1 Sep 2006 17:00:47 +0000 (17:00 +0000)]

updated binding with castor-1.0.2

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@232 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Fri, 1 Sep 2006 16:57:38 +0000 (16:57 +0000)]

Java binding for new document schema (from 1st hinxton vamsas Meeting)

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@231 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Wed, 24 May 2006 13:32:33 +0000 (13:32 +0000)]

introducing Lock File based locking (for portability) - part implemented.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@230 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Wed, 24 May 2006 13:30:43 +0000 (13:30 +0000)]

changes propagated from Provenance.App entry.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@229 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Wed, 24 May 2006 13:30:25 +0000 (13:30 +0000)]

changes propagated from Provenance.App entry.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@228 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Mon, 22 May 2006 16:31:32 +0000 (16:31 +0000)]

refactored uri type to a link element and replaced type references with element references.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@227 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Mon, 22 May 2006 16:29:12 +0000 (16:29 +0000)]

refactored uri type to a link element and replaced type references with element references.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@226 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Mon, 22 May 2006 16:27:33 +0000 (16:27 +0000)]

fixed loss of plural alignmentannotation in new schema version

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@225 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Mon, 22 May 2006 16:17:30 +0000 (16:17 +0000)]

refactored uri type to a link element and replaced type references with element references.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@224 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Mon, 22 May 2006 15:59:40 +0000 (15:59 +0000)]

autogenerated java classes for current schema

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@223 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Mon, 22 May 2006 15:50:38 +0000 (15:50 +0000)]

added 'attachment' element example.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@222 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Mon, 22 May 2006 15:50:20 +0000 (15:50 +0000)]

post-meeting refinements and commenting.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@221 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Fri, 19 May 2006 16:53:59 +0000 (16:53 +0000)]

still refactoring the rangeType and features/annotation elements.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@220 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Thu, 18 May 2006 17:01:14 +0000 (17:01 +0000)]

current vamsas type document. Still being worked on and refined.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@219 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Mon, 27 Mar 2006 12:18:18 +0000 (12:18 +0000)]

added registration/object retrieval methods to ClientDoc.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@218 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Mon, 27 Mar 2006 12:17:43 +0000 (12:17 +0000)]

Incorrect bounds for Provenance type in Dataset.DatasetAnnotations. (could have an array of provenance arrays).

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@217 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Mon, 27 Mar 2006 11:46:41 +0000 (11:46 +0000)]

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jprocter [Sun, 26 Mar 2006 17:08:41 +0000 (17:08 +0000)]

debugged the runnable main for ArchiveClient. ClientDoc provides api returned by ArchiveClient.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@215 be28352e-c001-0410-b1a7-c7978e42abec

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jprocter [Sun, 26 Mar 2006 17:07:33 +0000 (17:07 +0000)]

latest version is Beta. but we might change this :)

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jprocter [Sun, 26 Mar 2006 17:06:51 +0000 (17:06 +0000)]

added new constructor and File object accessor to make VamsasFile usable with VamsasArchive.

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jprocter [Fri, 24 Mar 2006 19:16:26 +0000 (19:16 +0000)]

fixed (hopefully) locking/read problems in test.simpleclient.VamsasArchive/Watcher classes and commented out the RandomAccess based reading/writing for mo.

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jprocter [Fri, 24 Mar 2006 19:13:22 +0000 (19:13 +0000)]

fixed leaky lock (answers todo about verifying that channel.close() should be called before lock.release())

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jprocter [Fri, 24 Mar 2006 19:04:20 +0000 (19:04 +0000)]

new target - jar, and added an 'exclude' for Pierre's java5 vamav code (for the moment)

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jprocter [Fri, 24 Mar 2006 19:03:00 +0000 (19:03 +0000)]

simple test of locked IO based on ArchiveWatcher. Extend this to quickly incorporate vamsas dataset updates into a program (? really)

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jprocter [Fri, 24 Mar 2006 19:01:45 +0000 (19:01 +0000)]

commented out stream constructor for vamsasArchive.

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pmarguerite [Fri, 24 Mar 2006 15:40:31 +0000 (15:40 +0000)]

vamsas api example classes - AstexViewer@MSD-EBI

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jprocter [Fri, 24 Mar 2006 10:21:36 +0000 (10:21 +0000)]

developing streamReader tests.

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jprocter [Thu, 23 Mar 2006 19:27:57 +0000 (19:27 +0000)]

still dealing with JarInputStream issues.

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jprocter [Thu, 23 Mar 2006 14:13:46 +0000 (14:13 +0000)]

fixed exception when trying to cancel unwritten archives.

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jprocter [Thu, 23 Mar 2006 14:10:51 +0000 (14:10 +0000)]

debug output - just incase strange things are happening when trying to read jars

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pmarguerite [Thu, 23 Mar 2006 13:48:35 +0000 (13:48 +0000)]

fix call of the argument parsing - '!' missing

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jprocter [Thu, 23 Mar 2006 11:41:09 +0000 (11:41 +0000)]

locking for windows (XP) partly debugged. ClientsFileTest watchers do not behave perfectly yet.

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pmarguerite [Wed, 22 Mar 2006 17:29:00 +0000 (17:29 +0000)]

'!' missing for testing if the session directory is readeable.

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jprocter [Wed, 22 Mar 2006 17:04:50 +0000 (17:04 +0000)]

more fixes for clientdocument/simpleclient. Testign the vamsasArchive reader and sessionfile mechanism (windows patches)

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jprocter [Wed, 22 Mar 2006 14:12:54 +0000 (14:12 +0000)]

finished the Appdata/ClientDocument update mechanism. Untested!

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jprocter [Wed, 22 Mar 2006 14:12:12 +0000 (14:12 +0000)]

added new method for writing an AppData jar entry directly from an InputStream.
Also reprioritised some TODOs and made comments

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jprocter [Tue, 21 Mar 2006 17:18:41 +0000 (17:18 +0000)]

intermediate cjeckin - nfs woes!

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jprocter [Tue, 21 Mar 2006 11:59:49 +0000 (11:59 +0000)]

rearranged some todos and preparing to implement SimpleClient and ClientDocument IO stuff.

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jprocter [Tue, 21 Mar 2006 11:58:54 +0000 (11:58 +0000)]

refactored generally useful higher level document IO methods to base class.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@194 be28352e-c001-0410-b1a7-c7978e42abec