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You are running Crucible 4.2.1 with FishEye 4.2.1 (20161109135523 2016-11-09)

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Thursday 12 May
4:06 pm

Ben Soares

Merge branch 'develop' into issues/JAL-3553+JAL-3978+JAL-3989+JAL-4014_merged_with_develop

Took Issues Resolved (1 issue) from releases.html 2.11.2.3 row and put

in help/markdown/releases/release-2_11_2_3.md

and regenerated releases.html with

gradle releasesTemplates

Options
    • -1
    • +17
    /help/help/html/releases.html
    • -0
    • +9
    /help/markdown/releases/release-2_11_2_3.md
3:35 pm

Ben Soares

JAL-4014 4 gecos colour schemes added to help documentation

Options
    • -0
    • +4
    /help/help/help.jhm
    • -0
    • +4
    /help/help/helpTOC.xml
    • -0
    • +83
    /help/help/html/colourSchemes/gecos-blossom.html
    • -0
    • +83
    /help/help/html/colourSchemes/gecos-flower.html
    • -0
    • +83
    /help/help/html/colourSchemes/gecos-ocean.html
    • -0
    • +83
    /help/help/html/colourSchemes/gecos-sunset.html
    • -0
    • +105
    /help/help/html/colourSchemes/index.html
    • -0
    • +1
    /help/help/html/menus/alignmentMenu.html
    • -0
    • +1
    /help/help/html/menus/alwcolour.html
Wednesday 11 May
3:50 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into doc/release_2_11_2_3

Options
1:44 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-4012 JAL-4008 release notes for Jalview 2.11.2.3

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    • -1
    • +1
    /RELEASE
    • -1
    • +15
    /help/help/html/releases.html
Tuesday 10 May
5:56 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-4008 update jabaws client to 2.2.1 - definitely no log4j references !

Options
    • -1
    • +1
    /THIRDPARTYLIBS
    • binary
    /j11lib/jabaws-min-client-NO_LOG4J-2.2.0.jar
    • binary
    /j11lib/jabaws-min-client-NO_LOG4J-2.2.1.jar
    • binary
    /j8lib/jabaws-min-client-NO_LOG4J-2.2.0.jar
    • binary
    /j8lib/jabaws-min-client-NO_LOG4J-2.2.1.jar
12:26 pm

Jim Procter <j.procter@dundee.ac.uk>

JWS-128 patch out log4j references in the compbio.FileUtil class, and corresponding calls to methods in the JABAWS client and engine code.

Options
    • -22
    • +12
    /compbio-utils/compbio/util/FileUtil.java
    • -1
    • +1
    /engine/compbio/engine/client/ConfExecutable.java
    • -2
    • +2
    /engine/compbio/engine/client/EngineUtil.java
    • -2
    • +2
    /engine/compbio/engine/client/Util.java
    • -2
    • +2
    /engine/compbio/engine/local/ExecutableWrapper.java
12:17 pm

Jalview Development Admin <jalview-dev-owner@jalview.org>

Merge branch 'releases/Release_2_11_2_Branch'

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10:06 am

Ben Soares

JAL-4004 cosmetic improvements for Java documentation renderer

Options
    • -2
    • +6
    /build.gradle
    • -59
    • +60
    /help/help/html/releases.html
    • -0
    • +1
    /help/help/html/whatsNew.html
    • -4
    • +5
    /help/templates/releases.html
    • -0
    • +1
    /help/templates/whatsNew.html
Monday 09 May
11:21 pm

Ben Soares

JAL-4004 gradle task releasesTemplates now part of main build dependency tree. Improvements to releases.html.

Options
    • -636
    • +680
    /build.gradle
11:19 pm

Ben Soares

JAL-4004 working templates and generated whatsNew.html and releases.html file for both browser and Doc viewer

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    • -969
    • +949
    /help/help/html/releases.html
    • -2
    • +4
    /help/help/html/whatsNew.html
    • -21
    • +12
    /help/templates/releases.html
    • -3
    • +1
    /help/templates/whatsNew.html
10:58 pm

Ben Soares

JAL-4004 remove stray empty h3 headers

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    • -2
    • +0
    /help/markdown/releases/release-2_10_2b1.md
    • -1
    • +0
    /help/markdown/releases/release-2_10_3.md
    • -1
    • +0
    /help/markdown/releases/release-2_10_4.md
    • -2
    • +0
    /help/markdown/releases/release-2_10_4b1.md
    • -2
    • +0
    /help/markdown/releases/release-2_10_5.md
    • -0
    • +41
    /help/markdown/releases/temp
7:23 pm

Ben Soares

JAL-4004 gradle releasesTemplates builds releases.html

Options
    • -14
    • +49
    /build.gradle
    • -5550
    • +2871
    /help/help/html/releases.html
    • -25
    • +65
    /help/templates/releases.html
12:27 pm

Ben Soares

JAL-4004 Temporary mechanism to add JalviewJS link for selected versions to hugo website

Options
    • -0
    • +3
    /build.gradle
    • -0
    • +1
    /gradle.properties
    • -0
    • +2
    /utils/hugo/jalviewjs.txt
    • -1
    • +1
    /utils/hugo/templates/content/development/archive/Version-__VERSION_UNDERSCORES__/_index.md
11:33 am

Ben Soares

JAL-3989 Code tidying, added JVL_HEADER for older versions of Jalview, allow time in release date header

Options
    • -43
    • +147
    /build.gradle
    • -0
    • +2
    /gradle.properties
    • -0
    • +25
    /utils/hugo/old_jvl.txt
    • -0
    • +2
    /utils/hugo/templates/content/development/archive/Version-__VERSION_UNDERSCORES__/_index.md
Thursday 05 May
5:02 pm

Ben Soares

JAL-4004 Now generating hugo files from help/markdown/...

Options
    • -184
    • +105
    /build.gradle
    • -1
    • +1
    /gradle.properties
    • -0
    • +97
    /help/templates/whatsNew.html
    • -0
    • +221
    /utils/hugo/old_task_to_extract_markdown_from_old_releases_html.txt
    • -1
    • +1
    /utils/hugo/templates/content/development/archive/Version-__VERSION_UNDERSCORES__/_index.md
Wednesday 04 May
2:45 pm

Ben Soares

JAL-4004 existing releases-VERSION.md files and releases.html template

Options
    • -1
    • +3
    /gradle.properties
    • -0
    • +9
    /help/markdown/releases/release-2_0.md
    • -0
    • +22
    /help/markdown/releases/release-2_01.md
    • -0
    • +9
    /help/markdown/releases/release-2_02.md
    • -0
    • +20
    /help/markdown/releases/release-2_03.md
    • -0
    • +15
    /help/markdown/releases/release-2_04.md
    • -0
    • +14
    /help/markdown/releases/release-2_05.md
    • -0
    • +18
    /help/markdown/releases/release-2_05b.md
    • -0
    • +16
    /help/markdown/releases/release-2_06.md
    • -0
    • +20
    /help/markdown/releases/release-2_07.md
    • -0
    • +22
    /help/markdown/releases/release-2_08.md
    • -0
    • +16
    /help/markdown/releases/release-2_08_1.md
    • -0
    • +10
    /help/markdown/releases/release-2_08b.md
    • -0
    • +27
    /help/markdown/releases/release-2_1.md
    • -0
    • +135
    /help/markdown/releases/release-2_10_0.md
  16. … 42 more files in changeset.
1:18 am

Ben Soares

JAL-4004 locations for markdown to go into whatsnew.html, releases.html and Version-VERSION/_index.md

Options
    • -2
    • +8
    /build.gradle
    • -0
    • +2
    /gradle.properties
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_10_2b2.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_10_3.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_10_5.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_0.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_1_0.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_1_1.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_1_2.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_1_3.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_1_4.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_1_5.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_1_6.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_1_7.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_2_0.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_2_1.md
    • -0
    • +1
    /help/markdown/whatsnew/whatsnew-2_11_2_2.md
Tuesday 03 May
12:35 pm

Ben Soares

JAL-3989 improved parsing and formatting now using flex CSS layout for columns

Options
    • -47
    • +93
    /build.gradle
    • -0
    • +1
    /utils/hugo/templates/content/development/archive/Version-__VERSION_UNDERSCORES__/_index.md
12:35 pm

Ben Soares

JAL-1544 minor errors in releases.html and one missing version (2.8.2b1)

Options
    • -4
    • +18
    /help/help/html/releases.html
Friday 29 Apr
1:29 pm

Ben Soares

JAL-3989 small improvements to output markdown

Options
    • -20
    • +47
    /build.gradle
Thursday 28 Apr
2:47 pm

Ben Soares

JAL-3989 add in issue shortcodes to the archive version page changes list

Options
    • -39
    • +26
    /build.gradle
Wednesday 27 Apr
11:41 pm

Ben Soares

JAL-1544 version number typo, probably copy and paste

Options
    • -1
    • +1
    /help/help/html/releases.html
11:39 pm

Ben Soares

JAL-3989 Populate template files for hugo build: archive version files including changes from releases.html, and installers data file

Options
    • -14
    • +186
    /build.gradle
    • -0
    • +4
    /gradle.properties
    • -0
    • +15
    /utils/hugo/templates/content/development/archive/Version-__VERSION_UNDERSCORES__/_index.md
    • -0
    • +11
    /utils/hugo/templates/content/development/archive/Version-__VERSION_UNDERSCORES__/installers.md
Monday 25 Apr
8:32 pm

Ben Soares

JAL-3989 moved getdown build dirs to build/website/docroot/getdown/CHANNEL, build/website/docroot/old/VERSION and build/getdown/files, and files for hugo into build/website/hugo/... This is better in multiple ways including collating files needed for the hugo website and website docroot.

Options
    • -35
    • +38
    /build.gradle
    • -7
    • +4
    /gradle.properties
    • -4
    • +4
    /utils/install4j/install4j9_template.install4j
5:58 pm

Ben Soares

JAL-3989 Independent creation of JSON installer sections

Options
    • -61
    • +60
    /build.gradle
3:03 pm

Ben Soares

JAL-3978 clean up unnecessary local variables for JALVIEW_VERSION_UNDERSCORES

Options
    • -4
    • +2
    /build.gradle
Friday 22 Apr
4:17 pm

Ben Soares

JAL-3989 Changed to using com.google.common.hash for SHA256 sum, for gradle 7 compatibility

Options
    • -2
    • +5
    /build.gradle
3:13 pm

Ben Soares

Merge branch 'develop' into improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store

Options
Thursday 21 Apr
8:24 pm

Ben Soares

Merge branch 'develop' into merge/JAL-3978+JAL-3553+develop+JAL-3989

Options
7:59 pm

Ben Soares

Merge branch 'develop' into task/JAL-3991_check_actual_JAVA_VERSION_against_build_properties_in_application_startup

Options