jalview/src/jalview

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Name Revision Age Author
cache 6703c43 Jim Procter
gff 57738a1 Jim Procter <j.procter@dundee.ac.uk>
mime 6451d24 jprocter <Jim Procter>
packed 4a922b3 Mateusz Warowny
vamsas 57738a1 Jim Procter <j.procter@dundee.ac.uk>
vcf dc91411 Jim Procter <j.procter@dundee.ac.uk>
xdb 96f10f9 Jim Procter <jprocter@dundee.ac.uk>
File .cvsignore deleted c993619 Bob Hanson
File AMSAFile.java 74b531f gmungoc <g.m.carstairs@dundee.ac.uk>
File AlignFile.java 48a6619 Jim Procter <j.procter@dundee.ac.uk>
File AlignmentFileI.java deleted 35ce460 gmungoc <g.m.carstairs@dundee.ac.uk>
File AlignmentFileReaderI.java d4a6a84 Jim Procter <j.procter@dundee.ac.uk>
File AlignmentFileWriterI.java 48e6890 gmungoc <g.m.carstairs@dundee.ac.uk>
File AlignmentProperties.java 74237ef gmungoc <g.m.carstairs@dundee.ac.uk>
File AnnotationFile.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File AnnotationReader.java deleted e894eb8 jprocter <Jim Procter>
File AnnotationUtil.java b8cd52f Tochukwu Charles N Ofoegbu
File AppletFormatAdapter.java fbfbbe2 Jim Procter <j.procter@dundee.ac.uk>
File BLCFile.java ff450fa gmungoc <g.m.carstairs@dundee.ac.uk>
File BSMLFile.java 80202c8 Bob Hanson
File BackupFileFilter.java deleted 61e7d35 Ben Soares
File BackupFilenameFilter.java c7827c8 Jim Procter
File BackupFilenameParts.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File BackupFiles.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File BackupFilesPresetEntry.java cb8e52f Jim Procter <j.procter@dundee.ac.uk>
File BamFile.java 0f21658 Jim Procter <j.procter@dundee.ac.uk>
File BioJsHTMLOutput.java f96e6a9 Jim Procter <j.procter@dundee.ac.uk>
File ClansFile.java deleted fa6001e gmungoc <g.m.carstairs@dundee.ac.uk>
File ClustalFile.java bd14eb7 Jim Procter
File CountReader.java 586ade4 Jim Procter
File DBRefFetcher.java deleted 5d88ae6 jprocter <Jim Procter>
File DBRefFile.java 37de931 Jim Procter
File DasSequenceFeatureFetcher.java deleted 5d88ae6 jprocter <Jim Procter>
File DataSourceType.java e6fd516 Bob Hanson
File DnaUtils.java 96f10f9 Jim Procter <jprocter@dundee.ac.uk>
File EBIFetchClient.java deleted 5d88ae6 jprocter <Jim Procter>
File EMBLLikeFlatFile.java d654b1f Jim Procter <j.procter@dundee.ac.uk>
File EmblFlatFile.java d654b1f Jim Procter <j.procter@dundee.ac.uk>
File FastaFile.java 552acd5 Ben Soares
File FeaturesFile.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File FileFormat.java 556647d Jim Procter <j.procter@dundee.ac.uk>
File FileFormatException.java f4766a7 gmungoc <g.m.carstairs@dundee.ac.uk>
File FileFormatI.java f78ed45 kjvdheide <kjvanderheide@dundee.ac.uk>
File FileFormats.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File FileLoader.java 4a3def9 Jim Procter <j.procter@dundee.ac.uk>
File FileParse.java cb8e52f Jim Procter <j.procter@dundee.ac.uk>
File FileProperties.java deleted c8ff21a amwaterhouse <Andrew Waterhouse>
File FlatFile.java deleted 2ed4d62 Jim Procter <j.procter@dundee.ac.uk>
File FormatAdapter.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File FormatFactory.java deleted eea62fa amwaterhouse <Andrew Waterhouse>
File FormatProperties.java deleted eea62fa amwaterhouse <Andrew Waterhouse>
File FormatProperty.java deleted eea62fa amwaterhouse <Andrew Waterhouse>
File FormatPropertyVector.java deleted eea62fa amwaterhouse <Andrew Waterhouse>
File GenBankFile.java d654b1f Jim Procter <j.procter@dundee.ac.uk>
File Gff3File.java deleted 26ba864 gmungoc <g.m.carstairs@dundee.ac.uk>
File HMMFile.java c794c50 Jim Procter
File HTMLOutput.java f4b18ae Ben Soares
File HtmlFile.java 136c079 gmungoc <g.m.carstairs@dundee.ac.uk>
File HtmlSvgOutput.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File IdentifyFile.java 3c7d4cf Jim Procter <j.procter@dundee.ac.uk>
File InputStreamParser.java 1419374 gmungoc <g.m.carstairs@dundee.ac.uk>
File IntKeyStringValueEntry.java c7827c8 Jim Procter
File JPredClient.java deleted b8682cd jprocter <Jim Procter>
File JPredFile.java 9d24084 Ben Soares
File JSONFile.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File JalviewFileChooser.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File JalviewFileFilter.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File JalviewFileView.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File JnetAnnotationMaker.java 9d24084 Ben Soares
File MSFfile.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File MatrixFile.java deleted fa6001e gmungoc <g.m.carstairs@dundee.ac.uk>
File MegaFile.java 4a85628 gmungoc <g.m.carstairs@dundee.ac.uk>
File ModellerDescription.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File NewickFile.java c697785 Jim Procter <j.procter@dundee.ac.uk>
File OutputGenerator.java deleted c8ff21a amwaterhouse <Andrew Waterhouse>
File PContactPredictionFile.java 554e7db Jim Procter
File PDBFeatureSettings.java 1f02939 gmungoc <g.m.carstairs@dundee.ac.uk>
File PIRFile.java 92d6680 Bob Hanson
File PfamFile.java f4766a7 gmungoc <g.m.carstairs@dundee.ac.uk>
File PhylipFile.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File PileUpfile.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File PostscriptProperties.java deleted c8ff21a amwaterhouse <Andrew Waterhouse>
File RnamlFile.java 76821e9 Bob Hanson
File ScoreMatrixFile.java 23ad471 Ben Soares
File SequenceAnnotationReport.java 5d003f4 Jim Procter <j.procter@dundee.ac.uk>
File SequenceFeatureFetcher.java deleted e894eb8 jprocter <Jim Procter>
File SequenceFeatureSourceI.java deleted 762725d amwaterhouse <Andrew Waterhouse>
File SiftsClient.java deleted 89f62b2 Tochukwu Charles N Ofoegbu
File SimpleBlastFile.java f4766a7 gmungoc <g.m.carstairs@dundee.ac.uk>
File StockholmFile.java 63fe129 Jim Procter <j.procter@dundee.ac.uk>
File StructureFile.java 57738a1 Jim Procter <j.procter@dundee.ac.uk>
File TCoffeeScoreFile.java a83adb4 Ben Soares
File VamsasAppDatastore.java cbdf701 Ben Soares
File VamsasClient.java deleted 9126ec7 jprocter <Jim Procter>
File VamsasDatastore.java deleted a814169 jprocter <Jim Procter>
File WSWUBlastClient.java e82c0bb Bob Hanson