TODO.txt

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Minor changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4526 e3abac25-378b-4346-85de-24260fe3988d

  1. … 2 more files in changeset.
Services class refactored to get rid of engines and runners dependencies. Build script has new task to pack client sources

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4500 e3abac25-378b-4346-85de-24260fe3988d

  1. … 5 more files in changeset.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4412 e3abac25-378b-4346-85de-24260fe3988d

Better method for searching JAVA

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4392 e3abac25-378b-4346-85de-24260fe3988d

  1. … 3 more files in changeset.
Add servlet for public usage stats display.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4384 e3abac25-378b-4346-85de-24260fe3988d

  1. … 3 more files in changeset.
obtain JAVA executable path from the JAVA_HOME variable. Does not require path to java for jar libraries.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4376 e3abac25-378b-4346-85de-24260fe3988d

  1. … 3 more files in changeset.
Stat collector updates to work with JABA 2 input & output files

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4366 e3abac25-378b-4346-85de-24260fe3988d

  1. … 5 more files in changeset.
Clean database & small changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4363 e3abac25-378b-4346-85de-24260fe3988d

  1. … 32 more files in changeset.
Further simplification of build tasks get rid of biojava jar as it's not in use

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4328 e3abac25-378b-4346-85de-24260fe3988d

  1. … 3 more files in changeset.
regenerated stubs & TODO

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4314 e3abac25-378b-4346-85de-24260fe3988d

  1. … 19 more files in changeset.
Fix for testcases

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4307 e3abac25-378b-4346-85de-24260fe3988d

  1. … 11 more files in changeset.
Fixes for failed test cases (most was due to the data being used or problems with test cases themselves)

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4303 e3abac25-378b-4346-85de-24260fe3988d

  1. … 24 more files in changeset.
tcoffee updated docs & todo

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4301 e3abac25-378b-4346-85de-24260fe3988d

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todo update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4284 e3abac25-378b-4346-85de-24260fe3988d

new version of muscle 3.8.31 binaries for various systems, sources, help file and configuration is updated

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4283 e3abac25-378b-4346-85de-24260fe3988d

  1. … 49 more files in changeset.
todos

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4282 e3abac25-378b-4346-85de-24260fe3988d

Refactoring of all SequenceAnnotation web services New version of Metro Definition for IUPred exec Stubs regenerated

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4280 e3abac25-378b-4346-85de-24260fe3988d

  1. … 47 more files in changeset.
todos

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4279 e3abac25-378b-4346-85de-24260fe3988d

Binaries relocation

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4278 e3abac25-378b-4346-85de-24260fe3988d

  1. … 26 more files in changeset.
IUPred result readers. IUpred binaries compilation scripts. IUpred executable description. IUPred output files for testing

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4263 e3abac25-378b-4346-85de-24260fe3988d

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More work to disorder prediction client & services.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4236 e3abac25-378b-4346-85de-24260fe3988d

  1. … 14 more files in changeset.
Adding registry web service and changes to WStester and JWS2Client code. Bugs in input/ouput setup for a few web services fixed

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4223 e3abac25-378b-4346-85de-24260fe3988d

  1. … 16 more files in changeset.
exclude cancelled jobs from incomplete

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4214 e3abac25-378b-4346-85de-24260fe3988d

  1. … 7 more files in changeset.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4200 e3abac25-378b-4346-85de-24260fe3988d

A bug fix, help text for stat jsp pages and style improvements

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4199 e3abac25-378b-4346-85de-24260fe3988d

  1. … 8 more files in changeset.
Stat collection and display done

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4195 e3abac25-378b-4346-85de-24260fe3988d

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Refactor: relocate getLimit() method from Util client to Util engine as SkeletalExecutable (part of the engine depends on it)

Update compile ant task to get rid of warnings.

However, ant still does not complile due to cast issue. TODO later

Updating version of utils and datamodel as it includes the utils

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3967 e3abac25-378b-4346-85de-24260fe3988d

  1. … 19 more files in changeset.
Add exec statistics processor & derby database

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3806 e3abac25-378b-4346-85de-24260fe3988d

  1. … 80 more files in changeset.
Centralized statistic collector. All WS are converted to use the same input and output names nano time changed to milliseconds time. Is not finished yet

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3789 e3abac25-378b-4346-85de-24260fe3988d

  1. … 10 more files in changeset.
Change the way to deal with Limits to simplify wrapper writing and enable couping with null limits

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3750 e3abac25-378b-4346-85de-24260fe3988d

  1. … 25 more files in changeset.