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JWS-113 Commented Jpred entries in the datamodel, runner and webservices java source code.

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Refactoring (renaming) 2 classes: AsyncJobRunner.java -> AsyncClusterRunner.java and JobRunner.java -> ClusterRunner.java

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Refactoring: rename duplicated Util classes

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Fix problem with unknown global constants

Check and correct several runner testers

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Clustal Omega web service wrapper and tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4464 e3abac25-378b-4346-85de-24260fe3988d

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Wrapper for Clustal Omega.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4458 e3abac25-378b-4346-85de-24260fe3988d

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    ./ClustalOTester.java
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Add LoadBalancer and Limit testers from JWS2 branch

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3388 e3abac25-378b-4346-85de-24260fe3988d

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Next version of JABA

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2610 e3abac25-378b-4346-85de-24260fe3988d

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    ./ClustalWParametersTester.java
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    ./ClustalWTester.java
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    ./LimitTester.java
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    ./MafftParametersTester.java
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    ./MafftTester.java
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    ./MuscleParametersTester.java
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    ./MuscleTester.java
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    ./ProbconsParametersTester.java
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    ./ProbconsTester.java
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    ./TcoffeeParametersTester.java
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    ./TcoffeeTester.java
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    ./mafftParams_modification_for_testing.txt
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