jabaws/webservices

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Friday 18 Aug 2017
5:18 pm

Fábio Madeira

JWS-114 Bumped the version of the webservices 'JABAWS_VERSION' to 2.2.

Options
    • -1
    • +1
    ./data/msa/JABAService.java
Thursday 08 Jun 2017
5:43 pm

Fábio Madeira

JWS-121 Minor bug fix on the timeexec - wrong units.

Options
    • -1
    • +1
    ./stat/servlet/AnnualStat.java
    • -1
    • +1
    ./stat/servlet/ServiceStatus.java
Friday 02 Jun 2017
4:41 pm

Jim Procter

4:40 pm

Jim Procter

this looks like the same pattern of scheduler settings as in ServiceStatus - if you wanted to be more Java-ish, you'd have a generic ScheduledEventAttribute class that manipulated a given servlet c...

this looks like the same pattern of scheduler settings as in ServiceStatus - if you wanted to be more Java-ish, you'd have a generic ScheduledEventAttribute class that manipulated a given servlet context's attributes to create/update these stats

4:31 pm

Jim Procter

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  • CR-2
  • started review
JWS-121: Service status and usage statistics show cached results for faster loads
JWS-121: Service status and usage statistics show cached results for faster loads
3:16 pm

Fábio Madeira

JWS-121 Added new refresher methods and the respective servlets and mappings entries in web.xml. These are used to update the ServletContext values as an input from the user (clickable links) that point to the new endpoints.

Options
    • -0
    • +65
    ./stat/servlet/AnnualStatRefresher.java
    • -0
    • +68
    ./stat/servlet/ServiceStatusRefresher.java
  3. … 1 more file in changeset.
3:07 pm

Fábio Madeira

JWS-121 Improved the AnnualStat and ServiceStatus classes so they start the scheduler in the init() method and refresh the in memory cache every X minutes. The number of minutes is defined in the Engine.local.properties config. In memory values are cached in the ServletContext.

Options
    • -42
    • +168
    ./stat/servlet/AnnualStat.java
    • -101
    • +240
    ./stat/servlet/ServiceStatus.java
  3. … 3 more files in changeset.
3:00 pm

Fábio Madeira

JWS-121 Added new scheduler utility classes so that usage statistics and service status can be monitored in a cronjob-like manner. RefreshIterator implements a ScheduleIterator that runs a new task every X minutes.

Options
    • -0
    • +36
    ./stat/servlet/util/RefreshIterator.java
    • -0
    • +18
    ./stat/servlet/util/ScheduleIterator.java
    • -0
    • +108
    ./stat/servlet/util/Scheduler.java
    • -0
    • +68
    ./stat/servlet/util/SchedulerTask.java
Wednesday 31 May 2017
5:01 pm

Fábio Madeira

JWS-121 & JWS-111 Adding ‘timestamp’ (string formatted date + time) to the HttpServletRequest to be used in the jsp and setting ‘timexec’ as seconds instead of millisecs.

Options
    • -1
    • +7
    ./stat/servlet/AnnualStat.java
    • -2
    • +7
    ./stat/servlet/ServiceStatus.java
  3. … 2 more files in changeset.
Friday 26 May 2017
5:19 pm

Fábio Madeira

JWS-120 Fixes the exception raised by the ChunkHolder method in GenericMetadataService. This behavior was expected for services which do not support execution statistics. This solution was found in the compbio.ws.server.JronnWS.java.

Options
    • -0
    • +11
    ./ws/server/DisemblWS.java
    • -0
    • +11
    ./ws/server/GlobPlotWS.java
    • -0
    • +11
    ./ws/server/IUPredWS.java
Thursday 18 May 2017
11:57 am

Fábio Madeira

JWS-112 Updated AACon to version 1.1.

Options
    • -1
    • +4
    ./ws/client/Services.java
  2. … 3 more files in changeset.
Wednesday 12 Apr 2017
3:21 pm

Fábio Madeira

JWS-112 Updated the versions the tool versions that are shown in the ServiceStatus page

Options
    • -4
    • +4
    ./ws/client/Services.java
Tuesday 28 Feb 2017
12:21 pm

Fábio Madeira

JWS-113 Commented Jpred entries in the datamodel, runner and webservices java source code.

Options
    • -1
    • +1
    ./data/msa/Category.java
    • -16
    • +19
    ./ws/client/Jws2Client.java
    • -16
    • +16
    ./ws/client/Services.java
    • -3
    • +3
    ./ws/client/ServicesUtil.java
    • -5
    • +6
    ./ws/client/WSTester.java
    • -151
    • +151
    ./ws/server/JpredWS.java
    • -18
    • +18
    ./ws/server/WSUtil.java
  8. … 8 more files in changeset.
Monday 14 Oct 2013
10:58 am

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Define path to UNIREF database in conf/Executable.properties

Options
    • -1
    • +1
    ./ws/client/Jws2Client.java
  2. … 2 more files in changeset.
Friday 04 Oct 2013
3:19 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Comment code for future options

Options
    • -1
    • +6
    ./ws/client/Jws2Client.java
Monday 30 Sep 2013
2:31 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Remove still unsupported methods of RegistryWS

Options
    • -2
    • +4
    ./ws/client/Jws2Client.java
2:30 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Google analytics receives message with actual Jabaws version

Options
    • -2
    • +4
    ./ws/server/GAUtils.java
2:29 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Bug Fixg: testing RNAalifold jobs have been considered as real ones

Options
    • -1
    • +35
    ./stat/collector/InputFilter.java
    • -0
    • +6
    ./ws/client/WSTester.java
2:28 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

test WS on internal server in the case of proxying

Options
    • -52
    • +89
    ./stat/servlet/ServiceStatus.java
  2. … 1 more file in changeset.
2:27 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Add Jabaws version string available in Services

Options
    • -2
    • +4
    ./ws/client/Services.java
2:26 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Roll back some changes in WSDL of RegistryWS for some time: restore back compatibility

Options
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    • +2
    ./data/msa/RegistryWS.java
    • -2
    • +2
    ./ws/server/RegistryWS.java
    • -19
    • +0
    ./ws/server/resource/RegistryWS.wsdl
    • -14
    • +0
    ./ws/server/resource/RegistryWS_schema1.xsd
2:24 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Add Jabaws version id as publicly available string in webservices

Options
    • -0
    • +3
    ./data/msa/JABAService.java
Thursday 26 Sep 2013
2:30 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Refactoring (renaming) 2 classes: AsyncJobRunner.java -> AsyncClusterRunner.java and JobRunner.java -> ClusterRunner.java

Options
    • -1
    • +9
    ./ws/client/Jws2Client.java
    • -14
    • +7
    ./ws/server/MafftWS.java
    • -6
    • +3
    ./ws/server/SequenceAnnotationService.java
    • -3
    • +4
    ./ws/server/WSUtil.java
  5. … 23 more files in changeset.
Tuesday 24 Sep 2013
5:35 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Assign JABAService.V2_SERVICE_NAMESPACE to all new services: JpredWS, RNAalifoldWS, MSAprobsWS, GLprobsWS

Options
    • -4
    • +4
    ./ws/client/Services.java
    • -1
    • +1
    ./ws/server/ClustalOWS.java
    • -1
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    ./ws/server/GLprobsWS.java
    • -1
    • +1
    ./ws/server/JpredWS.java
    • -1
    • +1
    ./ws/server/MSAprobsWS.java
    • -146
    • +3
    ./ws/server/resource/GLprobsWS.wsdl
    • -374
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    ./ws/server/resource/GLprobsWS_schema1.xsd
    • -146
    • +3
    ./ws/server/resource/JpredWS.wsdl
    • -374
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    ./ws/server/resource/JpredWS_schema1.xsd
    • -146
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    ./ws/server/resource/MSAprobsWS.wsdl
    • -374
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    ./ws/server/resource/MSAprobsWS_schema1.xsd
    • -0
    • +149
    ./ws/server/resource/MsaWS.wsdl
    • -0
    • +374
    ./ws/server/resource/MsaWS_schema1.xsd
  14. … 1 more file in changeset.
3:11 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Add all needed infrastructure for MSAprobs and GLprobs

Options
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    • +2
    ./data/msa/Category.java
    • -40
    • +82
    ./ws/client/Services.java
    • -1
    • +7
    ./ws/client/ServicesUtil.java
    • -0
    • +157
    ./ws/server/GLprobsWS.java
    • -0
    • +157
    ./ws/server/MSAprobsWS.java
    • -0
    • +2
    ./ws/server/resource/ClustalWS_schema1.xsd
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    • +292
    ./ws/server/resource/GLprobsWS.wsdl
    • -0
    • +374
    ./ws/server/resource/GLprobsWS_schema1.xsd
    • -0
    • +2
    ./ws/server/resource/JpredWS_schema1.xsd
    • -0
    • +292
    ./ws/server/resource/MSAprobsWS.wsdl
    • -0
    • +374
    ./ws/server/resource/MSAprobsWS_schema1.xsd
    • -0
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    ./ws/server/resource/MafftWS_schema1.xsd
    • -0
    • +2
    ./ws/server/resource/MuscleWS_schema1.xsd
    • -0
    • +2
    ./ws/server/resource/RegistryWS_schema1.xsd
    • -0
    • +2
    ./ws/server/resource/TcoffeeWS_schema1.xsd
  16. … 20 more files in changeset.
3:10 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Add measurement of execution time for servlets

Options
    • -11
    • +2
    ./stat/collector/StatDB.java
    • -4
    • +5
    ./stat/servlet/AnnualStat.java
    • -3
    • +52
    ./stat/servlet/ServiceStatus.java
  4. … 2 more files in changeset.
Friday 20 Sep 2013
3:32 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Refactoring: rename duplicated Util classes

Options
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    • +5
    ./stat/servlet/ServiceStatus.java
    • -1
    • +2
    ./stat/servlet/StatisticCollector.java
    • -4
    • +45
    ./ws/client/WSTester.java
    • -7
    • +5
    ./ws/server/ClustalOWS.java
    • -7
    • +5
    ./ws/server/ClustalWS.java
    • -5
    • +14
    ./ws/server/GAUtils.java
    • -4
    • +5
    ./ws/server/GenericMetadataService.java
    • -4
    • +5
    ./ws/server/JpredWS.java
    • -10
    • +5
    ./ws/server/MafftWS.java
    • -1
    • +2
    ./ws/server/MainManager.java
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    • +6
    ./ws/server/MuscleWS.java
    • -3
    • +4
    ./ws/server/ProbconsWS.java
    • -3
    • +3
    ./ws/server/SetExecutableFlag.java
    • -7
    • +5
    ./ws/server/TcoffeeWS.java
    • -14
    • +9
    ./ws/server/WSUtil.java
  16. … 48 more files in changeset.
Thursday 19 Sep 2013
2:44 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

JWS-17 re-design behaviour of Option.toString

Options
    • -6
    • +20
    ./ws/client/MetadataHelper.java
  2. … 1 more file in changeset.
1:47 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Re-generate WS artefacts: option.furtherDetails is xs:string now

Options
    • -1
    • +1
    ./ws/server/resource/AAConWS_schema1.xsd
    • -1
    • +1
    ./ws/server/resource/ClustalWS_schema1.xsd
    • -1
    • +1
    ./ws/server/resource/DisemblWS_schema1.xsd
    • -1
    • +1
    ./ws/server/resource/GlobPlotWS_schema1.xsd
    • -1
    • +1
    ./ws/server/resource/IUPredWS_schema1.xsd
    • -1
    • +1
    ./ws/server/resource/JpredWS_schema1.xsd
    • -1
    • +1
    ./ws/server/resource/JronnWS_schema1.xsd
    • -1
    • +1
    ./ws/server/resource/MafftWS_schema1.xsd
    • -1
    • +1
    ./ws/server/resource/MuscleWS_schema1.xsd
    • -1
    • +1
    ./ws/server/resource/RNAalifoldWS_schema1.xsd
    • -1
    • +1
    ./ws/server/resource/TcoffeeWS_schema1.xsd
1:46 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

JWS-17: fix problem with undefined URL for the furtherDetails tag

Options
    • -5
    • +18
    ./ws/client/Jws2Client.java
    • -11
    • +18
    ./ws/client/MetadataHelper.java
  3. … 9 more files in changeset.