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JWS-114 Bumped the version of the webservices 'JABAWS_VERSION' to 2.2.

JWS-121 Minor bug fix on the timeexec - wrong units.

this looks like the same pattern of scheduler settings as in ServiceStatus - if you wanted to be more Java-ish, you'd have a generic ScheduledEventAttribute class that manipulated a given servlet c...

this looks like the same pattern of scheduler settings as in ServiceStatus - if you wanted to be more Java-ish, you'd have a generic ScheduledEventAttribute class that manipulated a given servlet context's attributes to create/update these stats

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JWS-121: Service status and usage statistics show cached results for faster loads
JWS-121: Service status and usage statistics show cached results for faster loads
JWS-121 Added new refresher methods and the respective servlets and mappings entries in web.xml. These are used to update the ServletContext values as an input from the user (clickable links) that point to the new endpoints.

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    ./stat/servlet/AnnualStatRefresher.java
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    ./stat/servlet/ServiceStatusRefresher.java
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JWS-121 Improved the AnnualStat and ServiceStatus classes so they start the scheduler in the init() method and refresh the in memory cache every X minutes. The number of minutes is defined in the Engine.local.properties config. In memory values are cached in the ServletContext.

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    ./stat/servlet/AnnualStat.java
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    ./stat/servlet/ServiceStatus.java
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JWS-121 Added new scheduler utility classes so that usage statistics and service status can be monitored in a cronjob-like manner. RefreshIterator implements a ScheduleIterator that runs a new task every X minutes.

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    ./stat/servlet/util/RefreshIterator.java
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    ./stat/servlet/util/ScheduleIterator.java
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    ./stat/servlet/util/Scheduler.java
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    ./stat/servlet/util/SchedulerTask.java
JWS-121 & JWS-111 Adding ‘timestamp’ (string formatted date + time) to the HttpServletRequest to be used in the jsp and setting ‘timexec’ as seconds instead of millisecs.

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JWS-120 Fixes the exception raised by the ChunkHolder method in GenericMetadataService. This behavior was expected for services which do not support execution statistics. This solution was found in the compbio.ws.server.JronnWS.java.

JWS-112 Updated AACon to version 1.1.

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JWS-112 Updated the versions the tool versions that are shown in the ServiceStatus page

JWS-113 Commented Jpred entries in the datamodel, runner and webservices java source code.

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Define path to UNIREF database in conf/Executable.properties

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Comment code for future options

Remove still unsupported methods of RegistryWS

Google analytics receives message with actual Jabaws version

Bug Fixg: testing RNAalifold jobs have been considered as real ones

test WS on internal server in the case of proxying

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    ./stat/servlet/ServiceStatus.java
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Add Jabaws version string available in Services

Roll back some changes in WSDL of RegistryWS for some time: restore back compatibility

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    ./ws/server/resource/RegistryWS.wsdl
Add Jabaws version id as publicly available string in webservices

Refactoring (renaming) 2 classes: AsyncJobRunner.java -> AsyncClusterRunner.java and JobRunner.java -> ClusterRunner.java

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    ./ws/server/SequenceAnnotationService.java
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Assign JABAService.V2_SERVICE_NAMESPACE to all new services: JpredWS, RNAalifoldWS, MSAprobsWS, GLprobsWS

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    ./ws/server/resource/GLprobsWS.wsdl
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    ./ws/server/resource/GLprobsWS_schema1.xsd
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    ./ws/server/resource/JpredWS.wsdl
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    ./ws/server/resource/JpredWS_schema1.xsd
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    ./ws/server/resource/MSAprobsWS.wsdl
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    ./ws/server/resource/MsaWS.wsdl
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    ./ws/server/resource/MsaWS_schema1.xsd
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Add all needed infrastructure for MSAprobs and GLprobs

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    ./ws/server/GLprobsWS.java
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    ./ws/server/MSAprobsWS.java
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    ./ws/server/resource/ClustalWS_schema1.xsd
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    ./ws/server/resource/GLprobsWS.wsdl
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    ./ws/server/resource/GLprobsWS_schema1.xsd
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    ./ws/server/resource/JpredWS_schema1.xsd
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    ./ws/server/resource/MSAprobsWS.wsdl
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    ./ws/server/resource/MSAprobsWS_schema1.xsd
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    ./ws/server/resource/MafftWS_schema1.xsd
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    ./ws/server/resource/MuscleWS_schema1.xsd
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    ./ws/server/resource/TcoffeeWS_schema1.xsd
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Add measurement of execution time for servlets

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Refactoring: rename duplicated Util classes

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    ./stat/servlet/StatisticCollector.java
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    ./ws/server/GenericMetadataService.java
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JWS-17 re-design behaviour of Option.toString

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Re-generate WS artefacts: option.furtherDetails is xs:string now

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    ./ws/server/resource/AAConWS_schema1.xsd
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    ./ws/server/resource/ClustalWS_schema1.xsd
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    ./ws/server/resource/DisemblWS_schema1.xsd
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    ./ws/server/resource/IUPredWS_schema1.xsd
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    ./ws/server/resource/JpredWS_schema1.xsd
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    ./ws/server/resource/JronnWS_schema1.xsd
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    ./ws/server/resource/MafftWS_schema1.xsd
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    ./ws/server/resource/MuscleWS_schema1.xsd
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    ./ws/server/resource/TcoffeeWS_schema1.xsd
JWS-17: fix problem with undefined URL for the furtherDetails tag

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