jabaws/webservices/compbio/data

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Friday 18 Aug 2017
5:18 pm

Fábio Madeira

JWS-114 Bumped the version of the webservices 'JABAWS_VERSION' to 2.2.

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    ./JABAService.java
Tuesday 28 Feb 2017
12:21 pm

Fábio Madeira

JWS-113 Commented Jpred entries in the datamodel, runner and webservices java source code.

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    ./Category.java
  2. … 14 more files in changeset.
Monday 30 Sep 2013
2:26 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Roll back some changes in WSDL of RegistryWS for some time: restore back compatibility

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    ./RegistryWS.java
  2. … 3 more files in changeset.
2:24 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Add Jabaws version id as publicly available string in webservices

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    ./JABAService.java
Tuesday 24 Sep 2013
3:11 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Add all needed infrastructure for MSAprobs and GLprobs

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    ./Category.java
  2. … 34 more files in changeset.
Friday 06 Sep 2013
5:23 pm

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Merge branch 'JABAWS_Release_2_5' into develop

Conflicts:

.project

WEB-INF/sun-jaxws.xml

conf/Executable.properties

testsrc/compbio/data/sequence/SequenceUtilTester.java

webservices/compbio/data/msa/Category.java

webservices/compbio/ws/client/Jws2Client.java

webservices/compbio/ws/client/Services.java

webservices/compbio/ws/client/WSTester.java

webservices/compbio/ws/server/WSUtil.java

webservices/compbio/ws/server/resource/AAConWS.wsdl

webservices/compbio/ws/server/resource/AAConWS_schema1.xsd

webservices/compbio/ws/server/resource/ClustalWS.wsdl

webservices/compbio/ws/server/resource/ClustalWS_schema1.xsd

webservices/compbio/ws/server/resource/DisemblWS.wsdl

webservices/compbio/ws/server/resource/DisemblWS_schema1.xsd

webservices/compbio/ws/server/resource/GlobPlotWS.wsdl

webservices/compbio/ws/server/resource/GlobPlotWS_schema1.xsd

webservices/compbio/ws/server/resource/IUPredWS.wsdl

webservices/compbio/ws/server/resource/IUPredWS_schema1.xsd

webservices/compbio/ws/server/resource/JronnWS.wsdl

webservices/compbio/ws/server/resource/JronnWS_schema1.xsd

webservices/compbio/ws/server/resource/MafftWS.wsdl

webservices/compbio/ws/server/resource/MafftWS_schema1.xsd

webservices/compbio/ws/server/resource/MuscleWS.wsdl

webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd

webservices/compbio/ws/server/resource/RegistryWS.wsdl

webservices/compbio/ws/server/resource/RegistryWS_schema1.xsd

webservices/compbio/ws/server/resource/TcoffeeWS.wsdl

webservices/compbio/ws/server/resource/TcoffeeWS_schema1.xsd

wsbuild.xml

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    ./Category.java
  2. … 11 more files in changeset.
Thursday 05 Sep 2013
11:18 am

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Use "right" namespace, i.e. the name from JABAService

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    ./MsaWS.java
11:07 am

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Change JAXWS java code and wsdl for changed methods in RegistryWS

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    ./jaxws/GetNonoperatedServices.java
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    ./jaxws/GetNonoperatedServicesResponse.java
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10:50 am

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Add new method

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    ./RegistryWS.java
10:49 am

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Add new V3 namespace

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    ./JABAService.java
Friday 30 Aug 2013
10:57 am

Daniel Barton

Clean-up, refactoring, commenting. Parameters file containts only options since Jalview still can't deal with them

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    ./FoldWS.java
  2. … 14 more files in changeset.
Wednesday 28 Aug 2013
10:17 pm

Daniel Barton

Category.java updated to include new category for RNA folding. RNAalifoldParameters.xml cut down to a number of parameters which I think are needed and which work easily with Jalview

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    ./Category.java
  2. … 4 more files in changeset.
Thursday 22 Aug 2013
2:00 pm

Daniel Barton

Import RNAalifold removed from RNAStructReader. @XmlSeeAlso line added to ScoreManager.

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    ./jaxws/CancelJob.java
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    ./jaxws/GetLimit.java
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    ./jaxws/GetLimitResponse.java
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    ./jaxws/GetLimits.java
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    ./jaxws/GetLimitsResponse.java
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    ./jaxws/GetPresets.java
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    ./jaxws/GetPresetsResponse.java
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    ./jaxws/GetResultResponse.java
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    ./jaxws/GetRunnerOptions.java
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    ./jaxws/GetRunnerOptionsResponse.java
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    ./jaxws/JobSubmissionExceptionBean.java
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    ./jaxws/LimitExceededExceptionBean.java
  16. … 11 more files in changeset.
Thursday 15 Aug 2013
6:13 pm

Daniel Barton

Alifold results are now parsed and stored in a ScoreManager object

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    ./FoldWS.java
  2. … 14 more files in changeset.
Monday 12 Aug 2013
3:24 pm

Daniel Barton

Webservice which implements FoldWS and returns String. Parameters.xml file updated in line with the RunnerConfig schema.

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    ./FoldWS.java
  2. … 13 more files in changeset.
Friday 09 Aug 2013
10:13 am

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

JpredWS code and codes which provide support for JpredWS

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    ./Category.java
  2. … 8 more files in changeset.
10:09 am

Sasha Sherstnev <a.sherstnev@dundee.ac.uk>

Regenerated classes. No significant changes

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    ./jaxws/Align.java
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    ./jaxws/CustomAnalizeResponse.java
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    ./jaxws/GetAnnotation.java
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    ./jaxws/GetAnnotationResponse.java
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    ./jaxws/GetJobStatus.java
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    ./jaxws/GetJobStatusResponse.java
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    ./jaxws/GetLastTested.java
  16. … 36 more files in changeset.
Thursday 08 Aug 2013
10:34 am

Daniel Barton

Webservice works! but only supports some parameters. Replacing RNAstuct with String.

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    ./FoldWS.java
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    ./jaxws/CancelJob.java
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    ./jaxws/CancelJobResponse.java
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    ./jaxws/CustomFold.java
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    ./jaxws/CustomFoldResponse.java
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    ./jaxws/Fold.java
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    ./jaxws/FoldResponse.java
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    ./jaxws/GetPresets.java
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    ./jaxws/GetPresetsResponse.java
  16. … 23 more files in changeset.
Friday 19 Apr 2013
4:14 pm

Sasha <asherstnev@main-laptop2>

correct comment

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    ./MsaWS.java
Wednesday 02 Nov 2011
5:34 pm

jprocter <jprocter@e3abac25-378b-4346-85de-24260fe3988d>

test that methods and fields of Category are publicly accessible

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4707 e3abac25-378b-4346-85de-24260fe3988d

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    ./Category.java
  2. … 1 more file in changeset.
11:39 am

pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>

Fix bug in category class and use Jim's test as a test case

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4703 e3abac25-378b-4346-85de-24260fe3988d

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    ./Category.java
  2. … 19 more files in changeset.
Monday 31 Oct 2011
5:47 pm

pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>

Move Category into data.msa package from ws.server to get it into min jabaws package.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4700 e3abac25-378b-4346-85de-24260fe3988d

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    ./Category.java
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    ./RegistryWS.java
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    ./jaxws/GetServiceCategoriesResponse.java
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Monday 05 Sep 2011
4:20 pm

pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>

Update for web services stubs

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4566 e3abac25-378b-4346-85de-24260fe3988d

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    ./jaxws/GetServiceCategories.java
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    ./jaxws/GetServiceCategoriesResponse.java
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    ./jaxws/GetServiceDescription.java
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    ./jaxws/GetServiceDescriptionResponse.java
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4:09 pm

pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>

Add an implementation for Services.getServiceInfo method and categorization for services.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4562 e3abac25-378b-4346-85de-24260fe3988d

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    ./RegistryWS.java
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Friday 12 Aug 2011
2:35 pm

pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>

Javadoc fixes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4508 e3abac25-378b-4346-85de-24260fe3988d

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    ./RegistryWS.java
  2. … 31 more files in changeset.
Thursday 11 Aug 2011
4:00 pm

pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>

Change header template for a new version

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4495 e3abac25-378b-4346-85de-24260fe3988d

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    ./JABAService.java
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    ./JManagement.java
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    ./Metadata.java
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    ./MsaWS.java
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    ./RegistryWS.java
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    ./SequenceAnnotation.java
  7. … 37 more files in changeset.
Monday 27 Jun 2011
5:40 pm

pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>

Slight refactoring

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4342 e3abac25-378b-4346-85de-24260fe3988d

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    ./JABAService.java
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    ./jaxws/GetConservation.java
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    ./jaxws/GetConservationResponse.java
  6. … 34 more files in changeset.
Friday 17 Jun 2011
3:06 pm

pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>

Refactoring of all SequenceAnnotation web services New version of Metro Definition for IUPred exec Stubs regenerated

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4280 e3abac25-378b-4346-85de-24260fe3988d

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    ./jaxws/UnsupportedRuntimeExceptionBean.java
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    ./jaxws/WrongParameterExceptionBean.java
  6. … 43 more files in changeset.
Wednesday 08 Jun 2011
1:49 pm

pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>

Web service stubs are regenerated to incorporate new the methods. Excveption handling improved for tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4231 e3abac25-378b-4346-85de-24260fe3988d

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    ./jaxws/GetLastTested.java
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    ./jaxws/GetLastTestedOnResponse.java
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    ./jaxws/GetSupportedServices.java
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    ./jaxws/GetSupportedServicesResponse.java
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    ./jaxws/IsOperating.java
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    ./jaxws/TestServiceResponse.java
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Tuesday 07 Jun 2011
5:47 pm

pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>

further work on registry & WSTester nearly there

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4229 e3abac25-378b-4346-85de-24260fe3988d

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    ./RegistryWS.java
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