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JWS-121 Minor bug fix on the timeexec - wrong units.

this looks like the same pattern of scheduler settings as in ServiceStatus - if you wanted to be more Java-ish, you'd have a generic ScheduledEventAttribute class that manipulated a given servlet c...

this looks like the same pattern of scheduler settings as in ServiceStatus - if you wanted to be more Java-ish, you'd have a generic ScheduledEventAttribute class that manipulated a given servlet context's attributes to create/update these stats

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JWS-121: Service status and usage statistics show cached results for faster loads
JWS-121: Service status and usage statistics show cached results for faster loads
JWS-121 Added new refresher methods and the respective servlets and mappings entries in web.xml. These are used to update the ServletContext values as an input from the user (clickable links) that point to the new endpoints.

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    ./servlet/AnnualStatRefresher.java
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    ./servlet/ServiceStatusRefresher.java
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JWS-121 Improved the AnnualStat and ServiceStatus classes so they start the scheduler in the init() method and refresh the in memory cache every X minutes. The number of minutes is defined in the Engine.local.properties config. In memory values are cached in the ServletContext.

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    ./servlet/ServiceStatus.java
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JWS-121 Added new scheduler utility classes so that usage statistics and service status can be monitored in a cronjob-like manner. RefreshIterator implements a ScheduleIterator that runs a new task every X minutes.

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    ./servlet/util/RefreshIterator.java
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    ./servlet/util/ScheduleIterator.java
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    ./servlet/util/Scheduler.java
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    ./servlet/util/SchedulerTask.java
JWS-121 & JWS-111 Adding ‘timestamp’ (string formatted date + time) to the HttpServletRequest to be used in the jsp and setting ‘timexec’ as seconds instead of millisecs.

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Bug Fixg: testing RNAalifold jobs have been considered as real ones

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test WS on internal server in the case of proxying

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Add measurement of execution time for servlets

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Refactoring: rename duplicated Util classes

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Clean up logging system

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    ./servlet/HttpCodeResponseServiceStatus.java
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Re-design the ServiceStatus JSP page

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Other necessary changes

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Changes which allow JpredWS test

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Refactoring and code style improving

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Code for cleaning up old job directories

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    ./collector/JobDirectory.java
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Delete old job directory automatically

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    ./collector/DirCleaner.java
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    ./collector/ExecutionStatCollector.java
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    ./servlet/StatisticCollector.java
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cleat stats array and simplify internal structure

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    ./collector/ExecutionStatCollector.java
better way to set stat collection time, but should be moved to Engine.*.properties

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    ./servlet/StatisticCollector.java
add Logger to the class

fix jabaws download link

load the driver explicitly

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4813 e3abac25-378b-4346-85de-24260fe3988d

updated javadoc for the system as well as new redirect address for download app

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4793 e3abac25-378b-4346-85de-24260fe3988d

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web pages updates to point to new download location also the redirect servlet

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4788 e3abac25-378b-4346-85de-24260fe3988d

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    ./servlet/DownloadRedirector.java
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Remove test jobs from statistics

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4642 e3abac25-378b-4346-85de-24260fe3988d

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    ./collector/ExecutionStatCollector.java
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    ./collector/InputFilter.java
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add response to head method

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4589 e3abac25-378b-4346-85de-24260fe3988d

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    ./servlet/HttpCodeResponseServiceStatus.java
doc update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4573 e3abac25-378b-4346-85de-24260fe3988d

Web services status checking servlets, new clustalo x32 binary from Fabian, other small changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4571 e3abac25-378b-4346-85de-24260fe3988d

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    ./servlet/HttpCodeResponseServiceStatus.java
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    ./servlet/ServiceStatus.java
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    ./servlet/ServiceTestResult.java
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