jabaws

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JWS-113 Commented Jpred entries in the datamodel, runner and webservices java source code.

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    /datamodel/compbio/data/sequence/Program.java
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    /runner/compbio/runner/predictors/Jpred.java
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    /webservices/compbio/data/msa/Category.java
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    /webservices/compbio/ws/client/Services.java
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    /webservices/compbio/ws/client/WSTester.java
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    /webservices/compbio/ws/server/JpredWS.java
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    /webservices/compbio/ws/server/WSUtil.java
JWS-115 Bumping version to jabaws 2.2.

JWS-111 & JWS-109 Fixed some typos.

JWS-111 Fixed the location of the statspages, which are now included within the website folder.

JWS-111 & JWS-109 Re-uploading improved ‘Service Status’ and ‘Usage Statistics’ pages that use the template header and footer, as well as the bootstrap look.

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    /website/statpages/Joblist.jsp
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    /website/statpages/MonthlySummary.jsp
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    /website/statpages/ServicesStatus.jsp
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    /website/statpages/Statistics.jsp
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    /website/statpages/StatisticsTable.jsp
JWS-110 & JWS-109 Added a new downloads (static) page that avoids the signin/registration process.

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    /website/download.jsp
JWS-109 Added a new documentation root page for improving navigation and listing all the entries in the documentation manual.

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    /website/man_docs.jsp
JWS-109 Added a new about page for summarising small chunks that were previously spread over several number of pages.

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    /website/about.jsp
JWS-109 New JSP-based webpages generated from the original HTML files. These pages inherit the template header and footer.

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    /website/getting_started.jsp
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    /website/index.jsp
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    /website/man_about.jsp
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    /website/man_client.jsp
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    /website/man_configuration.jsp
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    /website/man_dev.jsp
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    /website/man_server_dev.jsp
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    /website/man_servervm.jsp
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    /website/man_serverwar.jsp
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    /website/man_stats.jsp
JWS-109 Added new header and footer JSP templates used by all other webpages.

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    /website/template_footer.jsp
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    /website/template_header.jsp
JWS-109 Added some basic styling and js very much inspired in the main Barton website.

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    /website/static/css/main.css
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    /website/static/js/main.js
JWS-111 & JWS-109 Minor changes to table.css (commented sections) in order to inherit Bootstrap styling.

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    /website/static/css/table.css
JWS-111 & JWS-109 Re-uploaded the css styling used in ‘usage statistics’ pages.

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    /website/static/css/alternative.css
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    /website/static/css/displaytag.css
JWS-111 & JWS-109 Re-uploading the figures used within usage statistic pages.

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    /website/static/img/tableview/displaytag.png
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    /website/static/img/tableview/favicon.ico
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    /website/static/img/tableview/ico_file_xml.png
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    /website/static/img/tableview/viewsource.png
JWS-109 Added an animated gif displayed while ‘Service Status’ or ’Usage Statistics’ pages are loading.

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    /website/static/img/loader.gif
JWS-109 Added a new JABAWS 2.2 logo for the website header.

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    /website/static/img/jabaws2.2.svg
JWS-109 Added some static figures/logos from the Barton website.

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    /website/static/img/BG_with_text.svg
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    /website/static/img/University_white_logo.svg
JWS-109 Improved logos for the funding bodies for consistency.

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    /website/static/img/bbsrc_flat.jpg
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    /website/static/img/sulsa_flat.jpg
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    /website/static/img/wellcome_flat.jpg
JWS-109 Re-uploading a selection of the images that are used in the revised website.

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    /website/static/img/VMware_booted.png
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    /website/static/img/VMware_cpu.png
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    /website/static/img/usage_statistics_details.gif
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    /website/static/img/usage_statistics_job_details.gif
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    /website/static/img/usage_statistics_main.gif
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    /website/static/img/usage_statistics_month.gif
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    /website/static/img/vm_welcome_screen.png
JWS-109 Added a local install of the Font-Awesome 4.7 goodies.

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    /website/static/css/font-awesome.min.css
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JWS-109 Added a local install of the Bootstrap 3.3 goodies.

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    /website/static/css/bootstrap.min.css
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    /website/static/fonts/glyphicons-halflings-regular.eot
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    /website/static/fonts/glyphicons-halflings-regular.svg
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    /website/static/js/bootstrap.min.js
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    /website/static/js/jquery-1.12.4.min.js
JWS-109 Automatic relative path refactoring by IntelliJ. Some paths other relative paths are now probably wrong.

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    /website/v_2_1_0/man_awscloud_ec2.html
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    /website/v_2_1_0/man_configuration.html
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    /website/v_2_1_0/manual_qs_amazon.html
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JWS-109 Moved HTML files and some other source files to a backup V_2_1_0 folder. Moving to JSP dynamic page generation.

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JWS-114 Commented out ‘cluster’ entries for consistency with other methods.

JWS-114 Added a missing section to Executable.properties.dundee (from Executable.properties).

JWS-113 Commented Jpred entries in various configuration files.

Replace temporary path to the download app with the standard one

Replace links to Download and last edit date

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Switch to Java 6 for building

Merge branch 'develop' of https://source.jalview.org/git/jabaws into develop