jalview

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Commits this week: 13
Total Committers: 64
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Commits this week: 13

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Today
6 hrs ago

hansonr <hansonr@STO24954W.ad.stolaf.edu>

Merge branch 'Jalview-JS/JAL-3253-applet' of https://source.jalview.org/git/jalview.git into Jalview-JS/JAL-3253-applet

Options
Friday 16 Aug
6:49 pm

hansonr <hansonr@STO24954W.ad.stolaf.edu>

JAL-3253-applet JAL-3414 Display Settings dialog slow to open

SwingJS-site.zip

corrects code in JSDialog that called parent.addNotify() every time, not

just before it has been connected.

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6:49 pm

hansonr <hansonr@STO24954W.ad.stolaf.edu>

JAL-3253-applet JAL-3397 delete fix

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    /src/intervalstore/nonc/IntervalStore.java
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1:43 pm

hansonr <hansonr@STO24954W.ad.stolaf.edu>

JAL-3253-applet JAL-3397 JAL-3383 fast IntervalStore for JavaScript

fully commented and cleaned code

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    /src/jalview/datamodel/features/FeatureStoreJS.java
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    /src/jalview/datamodel/features/SequenceFeatures.java
5:09 am

hansonr <hansonr@STO24954W.ad.stolaf.edu>

JAL-3253-applet JAL-3397 JAL-3383 fast IntervalStore for JavaScript

needs testing in JavaScript

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    /src/intervalstore/api/IntervalI.java
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    /src/intervalstore/nonc/IntervalComparator.java
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    /src/intervalstore/nonc/IntervalStore.java
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    /src/jalview/analysis/CrossRef.java
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    /src/jalview/datamodel/SequenceFeature.java
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    /src/jalview/datamodel/features/FeatureStore.java
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    /src/jalview/datamodel/features/FeatureStoreJS.java
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    /src/jalview/datamodel/features/SequenceFeatures.java
Thursday 15 Aug
10:34 am

Ben Soares

JAL-3210 updating. no test

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    /build.gradle
Tuesday 13 Aug
9:49 pm

Ben Soares

JAL-3210 testing

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4:50 pm

Jim Procter

JAL-3362 keep Java 1.8 build happy by specifying generic type arguments

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    /src/jalview/io/SequenceAnnotationReport.java
4:22 pm

Jim Procter

Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into merge-212

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    /resources/lang/Messages.properties
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    /src/jalview/io/SequenceAnnotationReport.java
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    /test/jalview/renderer/seqfeatures/FeatureColourFinderTest.java
1:38 pm

Ben Soares

JAL-3210 test commit

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1:33 pm

Ben Soares

JAL-3210 updating. no test

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    /gradle.properties
10:58 am

Ben Soares

JAL-3210 updating. no test

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    /build.gradle
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Monday 12 Aug
4:43 pm

Jim Procter

JAL-3235 isolated the 'unsafe' override of entrySet to the saveProperties method, since we only need ordered output on save

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    /src/jalview/bin/Cache.java
Saturday 10 Aug
6:44 am

Mungo Carstairs

JAL-3404 fix up test compilation errors

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    /src/jalview/ext/jmol/JalviewJmolBinding.java
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    /src/jalview/structures/models/AAStructureBindingModel.java
5:20 am

Mungo Carstairs

JAL-3404 explicit getModelForPdbFile lookup

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    /src/jalview/ext/jmol/JalviewJmolBinding.java
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    /src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
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    /src/jalview/structures/models/AAStructureBindingModel.java
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    /src/jalview/util/StructureCommands.java
Friday 09 Aug
9:42 pm

Mungo Carstairs

JAL-3990 fix typo in showStructures command for Chimera

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    /src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
12:33 pm

Mungo Carstairs

JAL-3390 refactoring tidy of colourBySequence call stack

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    /src/jalview/ext/jmol/JalviewJmolBinding.java
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    /test/jalview/ext/jmol/JmolCommandsTest.java
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    /test/jalview/structures/models/AAStructureBindingModelTest.java
9:01 am

Mungo Carstairs

JAL-3187 removal of variant feature (non-virtual) transfer to protein

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    /test/jalview/analysis/AlignmentUtilsTests.java
8:48 am

Mungo Carstairs

JAL-3390 move StructureCommands to utils package

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    /src/jalview/ext/jmol/JalviewJmolBinding.java
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Thursday 08 Aug
5:23 pm

Mungo Carstairs

JAL-3390 improved Jmol colour by sequence command + tests + deprecations

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    /test/jalview/ext/jmol/JmolCommandsTest.java
4:59 pm

Ben Soares

JAL-3210 ben testing

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4:53 pm

Ben Soares

JAL-3210 ben testing

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4:42 pm

Ben Soares

JAL-3210 ben testing

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4:17 pm

Ben Soares

JAL-3210 ben testing

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4:07 pm

Mungo Carstairs

JAL-3403 Fit To Window menu item for Jmol

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4:01 pm

Mungo Carstairs

JAL-3390 StructureCommands atomspec helper, corrected Jmol atomspec/test

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3:02 pm

Ben Soares

JAL-3210 ben testing

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2:59 pm

Ben Soares

JAL-3210 ben testing

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2:02 pm

Ben Soares

JAL-3210 ben testing

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1:47 pm

Ben Soares

JAL-3210 ben testing

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