jalview

Clone Tools
  • last updated a few seconds ago
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
Merge branch 'bug/JAL-3536getCrossrefTwice' into develop

JAL-3186 ensure transparency slider position is updated on revert

    • -2
    • +16
    /src/jalview/gui/FeatureSettings.java
JAL-3186 avoid repainting twice in splitframe

Merge branch 'features/JAL-3187_uitweaks' into develop

Merge branch 'develop' into features/JAL-3187_uitweaks

JAL-3187 nice to have enabling/disabling of apply/cancel when feature settings have not yet been modified for a view

JAL-3187 use the recommended way of catching tab selection change events

    • -29
    • +31
    /src/jalview/gui/SplitFrame.java
JAL-3187 repaint complement after loading on features

JAL-3187 individual feature settings panel has revert/apply when embedded in a tab, and split frame feature settings has an OK and Cancel.

    • -25
    • +66
    /src/jalview/gui/FeatureSettings.java
JAL-2422 pull-up refactoring of structure commands (continued)

    • -1
    • +1
    /resources/lang/Messages_es.properties
    • -11
    • +11
    /src/jalview/appletgui/AppletJmol.java
    • -201
    • +37
    /src/jalview/ext/jmol/JalviewJmolBinding.java
    • -23
    • +101
    /src/jalview/ext/jmol/JmolCommands.java
    • -41
    • +111
    /src/jalview/ext/rbvi/chimera/ChimeraCommands.java
    • -0
    • +627
    /src/jalview/ext/rbvi/chimera/ChimeraXCommands.java
    • -23
    • +1
    /src/jalview/gui/ChimeraViewFrame.java
    • -0
    • +28
    /src/jalview/gui/ChimeraXViewFrame.java
    • -0
    • +18
    /src/jalview/gui/JalviewChimeraXBindingModel.java
  1. … 11 more files in changeset.
JAL-3187 i18n for titles in windows/tabs

JAL-3535 todo re titles for CDS and Protein views in the feature settings dialog pane

JAL-3187 - tabbed pane is nulled when feature settings is closed but not featureSettingsUI - check both are non-null or reconstruct

Merge branch 'develop' into improvement/JAL-3449_add_install4j_installer_getdown_versions_to_jalview_console.2

JAL-3289 Improved the name of the channel_launch.jvl file to channel_launch-CHANNELNAMEWITHPLANKEY.jvl

(Notes for self) - Ben verified on linux, OSX, Windows. Need to check there are docs and logging to indicate that the hard limit is reached, so if people want to adjust the limit they can !

(Notes for self) - Ben verified on linux, OSX, Windows.
Need to check there are docs and logging to indicate that the hard limit is reached, so if people want to adjust the limit they can !

JAL-3477 New sensible default decisions on memory, and new jvmmemmax setting for setting absolute...
JAL-3477 New sensible default decisions on memory, and new jvmmemmax setting for setting absolute...
JAL-3187 JAL-2764 close feature settings when parent align frame is closed (need to check feature settings is open before closing it :) )

Merge branch 'develop' of https://source.jalview.org/git/jalview into develop

JAL-3337 Adding .settings/org.eclipse.jdt.core.jalview.prefs file needed for gradle eclipse

Merge branch 'patch/JAL-3538_fontantialiasingbydefault' into develop

JAL-3538 JAL-3407 release notes

JAL-3407 release next week :D

JAL-3538 anti-aliasing enabled by default

JAL-3449 helper task to perform getdown digest on any dir

JAL-3449 ensuring latest getdown jar files after merge

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3449 merge from develop

JAL-3529 attempt to guess database for a sequence’s AC record based on the sequence type if the alignment had no PFAM or RFAM accession

    • -12
    • +17
    /src/jalview/io/StockholmFile.java