jalview

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Commits this week: 72
Total Committers: 63
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Commits this week: 72

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Thursday 20 Jun
5:48 pm

Jim Procter

JAL-3111 JAL-2962 JAL-2903 JAL-2986 release notes

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    /help/help/html/releases.html
5:31 pm

Jim Procter

5:10 pm

Jim Procter

JAL-3111 last final release date for 2.11.0 !

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    /help/help/html/releases.html
5:10 pm

Jim Procter

JAL-3111 2.11 improvement JAL-3205 JAL-3203 Post-hoc documentation of known defects not listed in earlier versions.

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    /help/help/html/releases.html
5:00 pm

Ben Soares

JAL-3322 New progress bar. Added option to report appbase in launcher window. Added ui.keep_on_top option for getdown window. Added a launch.jvl file. Added build_properties as a resource and build_properties.install at installation time (only)

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    /build.gradle
    • binary
    /getdown/lib/getdown-core-1.8.3-SNAPSHOT.jar
    • binary
    /getdown/lib/getdown-launcher.jar
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    /getdown/src/getdown/core/src/main/java/com/threerings/getdown/data/Application.java
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    /getdown/src/getdown/launcher/src/main/java/com/threerings/getdown/launcher/Getdown.java
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    /getdown/src/getdown/launcher/src/main/java/com/threerings/getdown/launcher/GetdownApp.java
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    /getdown/src/getdown/launcher/src/main/java/com/threerings/getdown/launcher/StatusPanel.java
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    /gradle.properties
    • binary
    /resources/images/file.png
    • binary
    /resources/images/jalview_logo_background_getdown-progress-TEST2.png
    • binary
    /resources/images/jalview_logo_background_getdown-progress.png
    • binary
    /resources/images/jalview_logo_background_getdown-progress3.png
    • binary
    /resources/images/jalview_logo_background_getdown-progress4.png
    • binary
    /resources/images/jalview_logo_background_getdown_instant-640x480.png
    • binary
    /resources/images/jalview_logo_background_getdown_instant-640x480.xcf
  16. … 4 more files in changeset.
4:11 pm

Jim Procter

Merge branch 'develop' into bug/JAL-2934proportionalScrolling

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4:10 pm

Jim Procter

JAL-3111 JAL-1424 release notes

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    /help/help/html/releases.html
3:02 pm

Jim Procter

JAL-3111 JAL-2816 docs

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    /help/help/html/releases.html
2:47 pm

Jim Procter

JAL-3111 signed off ’done’ issues in Jira as of now: JAL-1059,JAL-1117,JAL-1285,JAL-1793,JAL-1839,JAL-1929,JAL-2069,JAL-2185,JAL-2360,JAL-2416,JAL-2446,JAL-2620,JAL-2647,JAL-2671,JAL-2729,JAL-2753,JAL-2808,JAL-2816,JAL-2839,JAL-2864,JAL-2886,JAL-2898,JAL-2932,JAL-2965,JAL-3007,JAL-3018,JAL-3021,JAL-3139,JAL-3140,JAL-3141,JAL-3174,JAL-3179,JAL-3196,JAL-3198,JAL-3225,JAL-3232,JAL-3236,JAL-3248,JAL-3254,JAL-3260,JAL-3313,JAL-781,JAL-868

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    /help/help/html/releases.html
1:19 pm

Jim Procter

JAL-3111 JAL-3130 JAL-3235 Java 11 specific known defects in 2.11

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    /help/help/html/releases.html
12:53 pm

Ben Soares

JAL-3323 Improved macOS Old Jalview Uninstaller

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    /utils/install4j/Uninstall Old Jalview.app/Contents/Info.plist
    • binary
    /utils/install4j/Uninstall Old Jalview.app/Contents/MacOS/applet
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    /utils/install4j/Uninstall Old Jalview.app/Contents/Resources/Scripts/main.scpt
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    /utils/install4j/Uninstall Old Jalview.app/Contents/Resources/applet.rsrc
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    /utils/install4j/Uninstall Old Jalview.app/Contents/Resources/description.rtfd/TXT.rtf
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    /utils/install4j/Uninstall Old Jalview.app/Contents/_CodeSignature/CodeResources
    • binary
    /utils/install4j/Uninstall Old Jalview.scpt
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    /utils/install4j/install4j_template.install4j
Wednesday 19 Jun
1:44 pm

Jim Procter

Merge branch 'develop' into releases/Release_2_11_Branch

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1:42 pm

Jalview Development Admin <jalview-dev-owner@jalview.org>

JAL-3111 codesign the uninstaller again

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    /utils/install4j/Uninstall Old Jalview.app/Contents/MacOS/applet
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    /utils/install4j/Uninstall Old Jalview.app/Contents/_CodeSignature/CodeResources
1:03 pm

Jim Procter

Merge branch 'develop' into releases/Release_2_11_Branch

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12:51 pm

Ben Soares

Merge branch 'merge/JAL-3310_and_JAL-3300' into develop

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12:50 pm

Ben Soares

JAL-3321 Last pieces of the getdown-launcher.jar upgrade puzzle

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    /build.gradle
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    /getdown/lib/getdown-core-1.8.3-SNAPSHOT.jar
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    /getdown/lib/getdown-launcher.jar
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    /getdown/src/getdown/core/src/main/java/com/threerings/getdown/util/LaunchUtil.java
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    /getdown/src/getdown/launcher/src/main/java/com/threerings/getdown/launcher/GetdownApp.java
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    /gradle.properties
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    /j11lib/getdown-core.jar
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    /j8lib/getdown-core.jar
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    /src/jalview/bin/Cache.java
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    /src/jalview/bin/Jalview.java
12:48 pm

Ben Soares

JAL-3310 Removing i4jruntime.jar from dist. Not needed by Jalview

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    • binary
    /j11lib/i4jruntime.jar
    • binary
    /j8lib/i4jruntime.jar
11:13 am

Jim Procter

Merge branch 'develop' into releases/Release_2_11_Branch

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11:13 am

Jim Procter

Merge branch 'documentation/JAL-3111_release_211' into develop

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11:12 am

Jim Procter

JAL-3111 release notes for JAL-3313

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    /help/help/html/releases.html
11:09 am

Jim Procter

JAL-3111 formatting

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    /help/help/html/releases.html
11:05 am

Jim Procter

Merge branch 'develop' into documentation/JAL-3111_release_211

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11:01 am

Jim Procter

JAL-3111 release notes for JAL-27830 JAL-2876 JAL-2567 and JAL-2256

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    /help/help/html/releases.html
1:29 am

Ben Soares

JAL-3321 Corrected the badly configured getdown-launcher.jar for updating and updated build.gradle to make the right getdown.txt file

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    /build.gradle
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    /getdown/lib/getdown-core-1.8.3-SNAPSHOT.jar
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    /getdown/lib/getdown-launcher.jar
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    /getdown/src/getdown/launcher/src/main/java/com/threerings/getdown/launcher/Getdown.java
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    /getdown/src/getdown/launcher/src/main/java/com/threerings/getdown/launcher/GetdownApp.java
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    /gradle.properties
    • binary
    /j11lib/getdown-core.jar
    • binary
    /j8lib/getdown-core.jar
Tuesday 18 Jun
6:06 pm

Mungo Carstairs

JAL-3313 don't double count mapped codons

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    /src/jalview/analysis/AAFrequency.java
5:49 pm

Jim Procter

Merge branch 'bug/JAL-2830_editManglesDatasetSequence' into develop

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4:42 pm

Jim Procter

Merge branch 'documentation/JAL-3111_release_211' into bug/JAL-2830_editManglesDatasetSequence

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4:39 pm

Jim Procter

Merge branch 'bug/JAL-2830_editManglesDatasetSequence' into documentation/JAL-3111_release_211

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    /src/jalview/commands/EditCommand.java
4:38 pm

Jim Procter

JAL-3111 JAL-2446 mentioned in context with NCList->intervalstoreJ lib

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    /help/help/html/releases.html
4:31 pm

Jim Procter

JAL-3111 JAL-2684 JAL-2360 JAL-2416 release notes

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    /help/help/html/releases.html