jalview

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JAL-3111 last final release date for 2.11.0 !

JAL-3111 2.11 improvement JAL-3205 JAL-3203 Post-hoc documentation of known defects not listed in earlier versions.

JAL-3322 New progress bar. Added option to report appbase in launcher window. Added ui.keep_on_top option for getdown window. Added a launch.jvl file. Added build_properties as a resource and build_properties.install at installation time (only)

    • binary
    /getdown/lib/getdown-core-1.8.3-SNAPSHOT.jar
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    /resources/images/jalview_logo_background_getdown-progress-TEST2.png
    • binary
    /resources/images/jalview_logo_background_getdown-progress.png
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    /resources/images/jalview_logo_background_getdown-progress3.png
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    /resources/images/jalview_logo_background_getdown-progress4.png
    • binary
    /resources/images/jalview_logo_background_getdown_instant-640x480.png
    • binary
    /resources/images/jalview_logo_background_getdown_instant-640x480.xcf
  1. … 4 more files in changeset.
Merge branch 'develop' into bug/JAL-2934proportionalScrolling

JAL-3111 JAL-1424 release notes

JAL-3111 JAL-3130 JAL-3235 Java 11 specific known defects in 2.11

JAL-3323 Improved macOS Old Jalview Uninstaller

Merge branch 'develop' into releases/Release_2_11_Branch

JAL-3111 codesign the uninstaller again

Merge branch 'develop' into releases/Release_2_11_Branch

Merge branch 'merge/JAL-3310_and_JAL-3300' into develop

JAL-3321 Last pieces of the getdown-launcher.jar upgrade puzzle

    • binary
    /getdown/lib/getdown-core-1.8.3-SNAPSHOT.jar
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    • +745
    /src/jalview/bin/Jalview.java
JAL-3310 Removing i4jruntime.jar from dist. Not needed by Jalview

Merge branch 'develop' into releases/Release_2_11_Branch

Merge branch 'documentation/JAL-3111_release_211' into develop

JAL-3111 release notes for JAL-3313

JAL-3111 formatting

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    /help/help/html/releases.html
Merge branch 'develop' into documentation/JAL-3111_release_211

JAL-3321 Corrected the badly configured getdown-launcher.jar for updating and updated build.gradle to make the right getdown.txt file

    • binary
    /getdown/lib/getdown-core-1.8.3-SNAPSHOT.jar
JAL-3313 don't double count mapped codons

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    • +2
    /src/jalview/analysis/AAFrequency.java
Merge branch 'bug/JAL-2830_editManglesDatasetSequence' into develop

Merge branch 'documentation/JAL-3111_release_211' into bug/JAL-2830_editManglesDatasetSequence

Merge branch 'bug/JAL-2830_editManglesDatasetSequence' into documentation/JAL-3111_release_211

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    • +1
    /src/jalview/commands/EditCommand.java
JAL-3111 JAL-2446 mentioned in context with NCList->intervalstoreJ lib