jalview

.settings

Clone Tools

Stats

Commits this week: 0
Total Committers: 16
Last Commit:
Commits this week: 0

Lines of code count not available

Commit Activity

Commits By Day In Week
52 week commits volume
Commits By Day In Week
Commits by day
Commits By Day In Week
Commits by hour
Commits By Hour In Day
Commit calendar
 

Most active committers (90 days)

loading
loading
  • last updated a few seconds ago
All Commits Reviews
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
Saturday 29 Oct
12:20 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-4090 bump version and set up release notes for 2.11.3

Options
    • -0
    • +11
    ./org.eclipse.buildship.core.prefs
  2. … 2 more files in changeset.
Monday 23 Aug 2021
4:52 pm

Jim Procter

patch needed for 2.11.2 - JAL-3518 - catch case when no replies are available

patch needed for 2.11.2 - JAL-3518 - catch case when no replies are available

4:49 pm

Jim Procter

semantics for determining if a PDB file has a SIFTs mapping - could be absorbed into the PDB metadata object

semantics for determining if a PDB file has a SIFTs mapping - could be absorbed into the PDB metadata object

4:48 pm

Jim Procter

magic logic to recognise which structure database provider client to use - PDB or AlphaFold - ensures metadata and annotation rows are propagates

magic logic to recognise which structure database provider client to use - PDB or AlphaFold - ensures metadata and annotation rows are propagates

4:43 pm

Jim Procter

Reviewing the alphafold + contact matrix patch for 2.11.2
Reviewing the alphafold + contact matrix patch for 2.11.2
Tuesday 07 Apr 2020
11:31 pm

Bob Hanson

JAL-3253

sets setting for "unlikely argument type for collection" to warning; I

have set my workspace to error, but clearly it had not been like that,

because it found three errors. But now setting it to warning so that it

is not bothering me.

Options
    • -0
    • +5
    ./org.eclipse.jdt.core.prefs
Thursday 26 Mar 2020
5:37 pm

Ben Soares

JAL-3225 This one file needed for project if git clean -dfx run

Options
    • -0
    • +2
    ./org.eclipse.buildship.core.prefs
  2. … 1 more file in changeset.
5:37 pm

Ben Soares

JAL-3225 This one file needed for project if git clean -dfx run

Options
    • -0
    • +2
    ./org.eclipse.buildship.core.prefs
  2. … 1 more file in changeset.
5:13 pm

Ben Soares

JAL-3225 All of .settings now gitignored. org.eclipse...prefs made by buildship or gradle eclipse. Jalview specific prefs pulled in from utils/eclipse/org.eclipse.jdt.core.jalview.prefs

Options
    • -2
    • +0
    ./org.eclipse.buildship.core.prefs
    • -421
    • +0
    ./org.eclipse.jdt.core.jalview.prefs
    • -2
    • +0
    ./org.eclipse.jdt.groovy.core.prefs
    • -68
    • +0
    ./org.eclipse.jdt.ui.prefs
  5. … 3 more files in changeset.
5:13 pm

Ben Soares

JAL-3225 All of .settings now gitignored. org.eclipse...prefs made by buildship or gradle eclipse. Jalview specific prefs pulled in from utils/eclipse/org.eclipse.jdt.core.jalview.prefs

Options
    • -2
    • +0
    ./org.eclipse.buildship.core.prefs
    • -298
    • +0
    ./org.eclipse.jdt.core.jalview.prefs
    • -2
    • +0
    ./org.eclipse.jdt.groovy.core.prefs
    • -67
    • +0
    ./org.eclipse.jdt.ui.prefs
  5. … 3 more files in changeset.
Wednesday 18 Mar 2020
5:59 pm

Bob Hanson

Java 11/Gradle 2.5 upgrade

Options
    • -3
    • +5
    ./org.eclipse.jdt.core.prefs
  2. … 95 more files in changeset.
5:44 pm

Bob Hanson

JAL-3559 temporary branch adding JS files complete

Options
    • -0
    • +7
    ./.jsdtscope
    • -0
    • +1
    ./org.eclipse.wst.jsdt.ui.superType.container
    • -0
    • +1
    ./org.eclipse.wst.jsdt.ui.superType.name
  4. … 88 more files in changeset.
3:52 am

Bob Hanson

Java 11 integration;

-- compiler complaining about javax.xml module

Failed to resolve resource /.build_properties:

@swingjs/j2s/jalview/bin/Cache.js:164:24

transpiler was 3.2.9-v1 now 3.2.4.07 for net.miginfocom.swing.MigLayout

TypeError: C$.UNIT_MAP.put$TK$TV is not a function

-- some runtime errors involving resources

Options
    • -8
    • +30
    ./org.eclipse.jdt.core.prefs
  2. … 459 more files in changeset.
Wednesday 19 Feb 2020
3:19 pm

Jim Procter

Tuesday 05 Nov 2019
5:42 pm

Ben Soares

Revert "JAL-3210 default eclipse .project .classpath and .settings/org.eclipse.jdt.core.prefs so Eclipse as IDE can import without gradle"

This reverts commit aaa5f22a4544c3e72b5d29ef2f319e55af8e14f7.

Options
    • -423
    • +0
    ./org.eclipse.jdt.core.prefs
  2. … 2 more files in changeset.
4:18 pm

Ben Soares

JAL-3210 default eclipse .project .classpath and .settings/org.eclipse.jdt.core.prefs so Eclipse as IDE can import without gradle

Options
    • -0
    • +423
    ./org.eclipse.jdt.core.prefs
  2. … 2 more files in changeset.
Friday 01 Nov 2019
12:57 am

Ben Soares

JAL-3210 Automatic buildship/eclipse update to site when making changes to code

Options
    • -12
    • +12
    ./org.eclipse.jdt.core.jalview.prefs
  2. … 1 more file in changeset.
Thursday 31 Oct 2019
3:47 pm

Ben Soares

JAL-3210 Added jdt prefs from applet branch. Made IDE tasks more visible

Options
    • -3
    • +126
    ./org.eclipse.jdt.core.jalview.prefs
  2. … 1 more file in changeset.
Tuesday 08 Oct 2019
4:59 pm

Ben Soares

JAL-3210 removed eclipse project, classpath and core settings files from branch. Now generate these (once only) with 'gradle eclipse'.

Options
    • -299
    • +0
    ./org.eclipse.jdt.core.prefs
  2. … 2 more files in changeset.
Tuesday 24 Sep 2019
3:11 pm

Ben Soares

JAL-3210 correcting gitignore for eclipse settings

Options
    • -0
    • +2
    ./org.eclipse.buildship.core.prefs
    • -0
    • +298
    ./org.eclipse.jdt.core.jalview.prefs
  3. … 1 more file in changeset.
Tuesday 27 Aug 2019
10:20 pm

Ben Soares

JAL-3210 Barebones gradle/buildship/eclipse. See README

Options
    • -421
    • +0
    ./org.eclipse.jdt.core.prefs
    • -68
    • +0
    ./org.eclipse.jdt.ui.prefs
  3. … 1989 more files in changeset.
Tuesday 13 Aug 2019
9:49 pm

Ben Soares

JAL-3210 testing

Options
    • -0
    • +2
    ./org.eclipse.buildship.core.prefs
    • -0
    • +2
    ./org.eclipse.jdt.groovy.core.prefs
  3. … 5 more files in changeset.
1:38 pm

Ben Soares

JAL-3210 test commit

Options
    • -2
    • +0
    ./org.eclipse.buildship.core.prefs
    • -299
    • +0
    ./org.eclipse.jdt.core.prefs
    • -2
    • +0
    ./org.eclipse.jdt.groovy.core.prefs
    • -68
    • +0
    ./org.eclipse.jdt.ui.prefs
  5. … 4 more files in changeset.
10:58 am

Ben Soares

JAL-3210 updating. no test

Options
    • -1
    • +1
    ./org.eclipse.jdt.core.prefs
  2. … 7 more files in changeset.
Thursday 08 Aug 2019
4:53 pm

Ben Soares

JAL-3210 ben testing

Options
    • -271
    • +271
    ./org.eclipse.jdt.core.prefs
  2. … 4 more files in changeset.
4:17 pm

Ben Soares

JAL-3210 ben testing

Options
    • -6
    • +6
    ./org.eclipse.jdt.core.prefs
  2. … 3 more files in changeset.
3:02 pm

Ben Soares

JAL-3210 ben testing

Options
    • -269
    • +269
    ./org.eclipse.jdt.core.prefs
1:47 pm

Ben Soares

JAL-3210 ben testing

Options
    • -4
    • +4
    ./org.eclipse.jdt.core.prefs
  2. … 3 more files in changeset.
12:38 pm

Ben Soares

JAL-3210 ben testing

Options
    • -269
    • +270
    ./org.eclipse.jdt.core.prefs
  2. … 7 more files in changeset.
Tuesday 16 Jul 2019
8:14 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3210 Merge branch 'develop' into trialMerge

Conflicts:

.classpath

.project

.settings/org.eclipse.jdt.core.prefs

.settings/org.eclipse.jdt.ui.prefs

build.xml

resources/lang/Messages_es.properties

src/MCview/AppletPDBCanvas.java

src/MCview/Atom.java

src/MCview/PDBCanvas.java

src/jalview/analysis/AAFrequency.java

src/jalview/appletgui/EmbmenuFrame.java

src/jalview/appletgui/OverviewPanel.java

src/jalview/appletgui/SeqPanel.java

src/jalview/bin/Cache.java

src/jalview/bin/Jalview.java

src/jalview/datamodel/DBRefEntry.java

src/jalview/datamodel/Sequence.java

src/jalview/ext/ensembl/EnsemblMap.java

src/jalview/ext/paradise/Annotate3D.java

src/jalview/fts/service/pdb/PDBFTSRestClient.java

src/jalview/gui/Desktop.java

src/jalview/gui/FeatureRenderer.java

src/jalview/gui/FeatureTypeSettings.java

src/jalview/gui/WebserviceInfo.java

src/jalview/io/BackupFiles.java

src/jalview/io/FileLoader.java

src/jalview/jbgui/GDesktop.java

src/jalview/jbgui/GPreferences.java

src/jalview/project/Jalview2XML.java

src/jalview/util/ImageMaker.java

src/jalview/util/Platform.java

src/jalview/ws/SequenceFetcher.java

Options
    • -392
    • +270
    ./org.eclipse.jdt.core.prefs
    • -1
    • +1
    ./org.eclipse.jdt.ui.prefs
  3. … 76 more files in changeset.