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Tuesday 07 Apr 2020
11:31 pm

Bob Hanson

JAL-3253

sets setting for "unlikely argument type for collection" to warning; I

have set my workspace to error, but clearly it had not been like that,

because it found three errors. But now setting it to warning so that it

is not bothering me.

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    ./org.eclipse.jdt.core.prefs
Thursday 26 Mar 2020
5:37 pm

Ben Soares

JAL-3225 This one file needed for project if git clean -dfx run

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    ./org.eclipse.buildship.core.prefs
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5:37 pm

Ben Soares

JAL-3225 This one file needed for project if git clean -dfx run

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    ./org.eclipse.buildship.core.prefs
  2. … 1 more file in changeset.
5:13 pm

Ben Soares

JAL-3225 All of .settings now gitignored. org.eclipse...prefs made by buildship or gradle eclipse. Jalview specific prefs pulled in from utils/eclipse/org.eclipse.jdt.core.jalview.prefs

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    ./org.eclipse.buildship.core.prefs
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    ./org.eclipse.jdt.core.jalview.prefs
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    ./org.eclipse.jdt.groovy.core.prefs
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    ./org.eclipse.jdt.ui.prefs
  5. … 3 more files in changeset.
5:13 pm

Ben Soares

JAL-3225 All of .settings now gitignored. org.eclipse...prefs made by buildship or gradle eclipse. Jalview specific prefs pulled in from utils/eclipse/org.eclipse.jdt.core.jalview.prefs

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    ./org.eclipse.buildship.core.prefs
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    ./org.eclipse.jdt.core.jalview.prefs
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    ./org.eclipse.jdt.groovy.core.prefs
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    ./org.eclipse.jdt.ui.prefs
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Wednesday 18 Mar 2020
5:59 pm

Bob Hanson

Java 11/Gradle 2.5 upgrade

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    ./org.eclipse.jdt.core.prefs
  2. … 95 more files in changeset.
5:44 pm

Bob Hanson

JAL-3559 temporary branch adding JS files complete

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    ./.jsdtscope
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    ./org.eclipse.wst.jsdt.ui.superType.container
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    ./org.eclipse.wst.jsdt.ui.superType.name
  4. … 88 more files in changeset.
3:52 am

Bob Hanson

Java 11 integration;

-- compiler complaining about javax.xml module

Failed to resolve resource /.build_properties:

@swingjs/j2s/jalview/bin/Cache.js:164:24

transpiler was 3.2.9-v1 now 3.2.4.07 for net.miginfocom.swing.MigLayout

TypeError: C$.UNIT_MAP.put$TK$TV is not a function

-- some runtime errors involving resources

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Wednesday 19 Feb 2020
3:19 pm

Jim Procter

Tuesday 05 Nov 2019
5:42 pm

Ben Soares

Revert "JAL-3210 default eclipse .project .classpath and .settings/org.eclipse.jdt.core.prefs so Eclipse as IDE can import without gradle"

This reverts commit aaa5f22a4544c3e72b5d29ef2f319e55af8e14f7.

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4:18 pm

Ben Soares

JAL-3210 default eclipse .project .classpath and .settings/org.eclipse.jdt.core.prefs so Eclipse as IDE can import without gradle

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    ./org.eclipse.jdt.core.prefs
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Friday 01 Nov 2019
12:57 am

Ben Soares

JAL-3210 Automatic buildship/eclipse update to site when making changes to code

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    ./org.eclipse.jdt.core.jalview.prefs
  2. … 1 more file in changeset.
Thursday 31 Oct 2019
3:47 pm

Ben Soares

JAL-3210 Added jdt prefs from applet branch. Made IDE tasks more visible

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    ./org.eclipse.jdt.core.jalview.prefs
  2. … 1 more file in changeset.
Tuesday 08 Oct 2019
4:59 pm

Ben Soares

JAL-3210 removed eclipse project, classpath and core settings files from branch. Now generate these (once only) with 'gradle eclipse'.

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Tuesday 24 Sep 2019
3:11 pm

Ben Soares

JAL-3210 correcting gitignore for eclipse settings

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    ./org.eclipse.jdt.core.jalview.prefs
  3. … 1 more file in changeset.
Tuesday 27 Aug 2019
10:20 pm

Ben Soares

JAL-3210 Barebones gradle/buildship/eclipse. See README

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Tuesday 13 Aug 2019
9:49 pm

Ben Soares

JAL-3210 testing

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    ./org.eclipse.buildship.core.prefs
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    ./org.eclipse.jdt.groovy.core.prefs
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1:38 pm

Ben Soares

JAL-3210 test commit

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    ./org.eclipse.jdt.groovy.core.prefs
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    ./org.eclipse.jdt.ui.prefs
  5. … 4 more files in changeset.
10:58 am

Ben Soares

JAL-3210 updating. no test

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    ./org.eclipse.jdt.core.prefs
  2. … 7 more files in changeset.
Thursday 08 Aug 2019
4:53 pm

Ben Soares

JAL-3210 ben testing

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    ./org.eclipse.jdt.core.prefs
  2. … 4 more files in changeset.
4:17 pm

Ben Soares

JAL-3210 ben testing

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  2. … 3 more files in changeset.
3:02 pm

Ben Soares

JAL-3210 ben testing

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    ./org.eclipse.jdt.core.prefs
1:47 pm

Ben Soares

JAL-3210 ben testing

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  2. … 3 more files in changeset.
12:38 pm

Ben Soares

JAL-3210 ben testing

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Tuesday 16 Jul 2019
8:14 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3210 Merge branch 'develop' into trialMerge

Conflicts:

.classpath

.project

.settings/org.eclipse.jdt.core.prefs

.settings/org.eclipse.jdt.ui.prefs

build.xml

resources/lang/Messages_es.properties

src/MCview/AppletPDBCanvas.java

src/MCview/Atom.java

src/MCview/PDBCanvas.java

src/jalview/analysis/AAFrequency.java

src/jalview/appletgui/EmbmenuFrame.java

src/jalview/appletgui/OverviewPanel.java

src/jalview/appletgui/SeqPanel.java

src/jalview/bin/Cache.java

src/jalview/bin/Jalview.java

src/jalview/datamodel/DBRefEntry.java

src/jalview/datamodel/Sequence.java

src/jalview/ext/ensembl/EnsemblMap.java

src/jalview/ext/paradise/Annotate3D.java

src/jalview/fts/service/pdb/PDBFTSRestClient.java

src/jalview/gui/Desktop.java

src/jalview/gui/FeatureRenderer.java

src/jalview/gui/FeatureTypeSettings.java

src/jalview/gui/WebserviceInfo.java

src/jalview/io/BackupFiles.java

src/jalview/io/FileLoader.java

src/jalview/jbgui/GDesktop.java

src/jalview/jbgui/GPreferences.java

src/jalview/project/Jalview2XML.java

src/jalview/util/ImageMaker.java

src/jalview/util/Platform.java

src/jalview/ws/SequenceFetcher.java

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  3. … 76 more files in changeset.
Monday 15 Jul 2019
1:18 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

Update to match develop to allow merge

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    ./org.eclipse.jdt.groovy.core.prefs
Friday 07 Jun 2019
9:37 am

gmungoc <g.m.carstairs@dundee.ac.uk>

commit to enable merge

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    ./org.eclipse.jdt.groovy.core.prefs
Thursday 06 Jun 2019
2:15 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3187 commit to enable merge from develop

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Friday 24 May 2019
3:29 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3010 commit to enable merge

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    ./org.eclipse.jdt.groovy.core.prefs
11:31 am

gmungoc <g.m.carstairs@dundee.ac.uk>

Merge branch 'develop' into trialMerge

Conflicts:

.classpath

.project

.settings/org.eclipse.jdt.core.prefs

.settings/org.eclipse.jdt.groovy.core.prefs

.settings/org.eclipse.jdt.ui.prefs

build.xml

src/MCview/AppletPDBCanvas.java

src/MCview/Atom.java

src/MCview/PDBCanvas.java

src/jalview/appletgui/EmbmenuFrame.java

src/jalview/appletgui/OverviewPanel.java

src/jalview/appletgui/SeqPanel.java

src/jalview/bin/Jalview.java

src/jalview/ext/paradise/Annotate3D.java

src/jalview/gui/AlignFrame.java

src/jalview/gui/Desktop.java

src/jalview/gui/FeatureRenderer.java

src/jalview/gui/FeatureTypeSettings.java

src/jalview/io/FileLoader.java

src/jalview/jbgui/GDesktop.java

src/jalview/util/ImageMaker.java

src/jalview/util/Platform.java

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