jalview

Clone Tools
  • last updated a few seconds ago
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
Merge branch 'bug/JAL-2811' into bug/JAL-2831

JAL-2811 Changed to overlay on via graphics context, not separate image

JAL-2811 Missed commit

JAL-2811 Made it work for hidden columns/seqs too

JAL-2831 Attempt at cursor fix for wrapped mode

JAL-2758 update uniprot retrieval test

    • -7
    • +4
    /test/jalview/ws/dbsources/UniprotTest.java
Merge branch 'bug/JAL-2811' into bug/JAL-2831

JAL-2831 deal with hidden cols and seqs in new cursor code

JAL-2831 Added move viewport event and set up cursor code to use it

Merge branch 'imp/JAL-2774' into bug/JAL-2831

JAL-2754 corrected merge conflict

JAL-2758 release notes

JAL-2698 formatting

JAL-2805 interface comments

JAL-2805 some more name changes

    • -0
    • +83
    /src/jalview/ext/forester/ForesterDataConversions.java
    • -2
    • +2
    /src/jalview/ext/forester/ForesterMatrix.java
JAL-2805 more name changes for clarity

    • -0
    • +236
    /src/jalview/ext/archaeopteryx/AptxBinding.java
JAL-2805 more interface name changing

    • -0
    • +8
    /src/jalview/ext/forester/io/ExternalTreeParserI.java
    • -0
    • +119
    /src/jalview/ext/forester/io/ForesterTreeParser.java
JAL-2805 name changed of interfaces for consistency

    • -0
    • +50
    /src/jalview/ext/archaeopteryx/ExternalTreeViewerBindingI.java
JAL-2805 Jalview sequence binding interface expanded

JAL-2805 TreeParser now interface based

    • -0
    • +8
    /src/jalview/ext/forester/io/TreeParserI.java
JAL-2805 Added tree building interface

JAL-2805 name change

JAL-2805 deleted old Aptx class for loading just Newick files

JAL-2805 more interface work

JAL-2794 removed unused interface

JAL-2805 undid accidental double (buggy) binding, more interface support

    • -0
    • +102
    /src/jalview/ext/archaeopteryx/JalviewToAptxAssociation.java
Merge branch 'features/JAL-2758_shorteruniprot' into develop

JAL-2758 remove configurable behaviour - Uniprot sequences are only assigned IDs derived from Entry name

    • -19
    • +2
    /src/jalview/ws/dbsources/Uniprot.java
    • -1
    • +1
    /src/jalview/ws/dbsources/Uniprot.java