Clone Tools
  • last updated a few seconds ago
Constraints: committers
Constraints: files
Constraints: dates
JAL-1950 patch groovy bootstrap for importing hmmer3 json

    • -2
    • +2
JAL-3853 patch sequence annotation report code and tweak the test. When merging from 2.11.2 develop there will be conflicts that need merging re HTMLXML tags

JAL-3848 ensure annotation from a service gets a calcId so it can be updated and tracked across multiple views - nb - service.getId() probably isn’t the right value to use for this!

    • -1
    • +22
JAL-3848 don’t include sequence limits in sequence id as it confuses slivka-0.8’s jalview-feature-file creation script

JAL-3848 - actually test the Slivka and JABAWS disorder services - nb still need asserts to verify the disorder annotation from Slivka looks like Jabaws

JAL-3848 print exception for failed align jobs

JAL-3848 add latest slivka-client fixes.

JAL-3850 fixed full class name

JAL-3850 using reflection for SimpleHttpFileServerFactory

JAL-3848 patched SwingJS runtime rebuilt

JAL-3948 - temporarily add the ojdk8 calendardata file (GPL licensed)

    • -0
    • +1488
Merge branch 'improvement/JAL-3848_slivka_0.8_updated_jslib' of https://source.jalview.org/git/jalview into improvement/JAL-3848_slivka_0.8_updated_jslib

JAL-3848 j2s 3.2.10-v1 slivka-java-client jslib

    • binary
JAL-3848 nominal build of slivka 0.8 compatible java client library

    • binary
JAL-3842 fix automatic what's new link for custom version builds

Merge branch 'jpred-fix' into bug/JAL-3807_jpred-with-slivka

JAL-3807 Fix SlivkaWSInstance not fetching alignments.

Merge branch 'bug/JAL-3849_aacon-parameters' into improvement/JAL-3848_slivka_0.8

JAL-3690 Remove references to old AlignCalcManager.

    • -164
    • +0
    • -1
    • +0
    • -2
    • +0
JAL-3849 Remove join() which blocked the ui.

JAL-3848 SlivkaParamSet: reformat code and add service description.

    • -10
    • +14
JAL-3848 Update slivka client library.

    • -62
    • +67

    • -62
    • +67
JAL-3847 set default behaviour as exclude when dealing with duplicate entries in jars and zips

JAL-3847 set default behaviour as exclude when dealing with duplicate entries in jars and zips

JAL-3842 JAL-3746 (need to cherry pick to develop) - automatically generate link to latest release notes in what's new

JAL-3594 Updated the Jalview Develop getdown splashscreen image with Geoff's license free photo

JAL-3842 what’s new, release notes, and version bump

Merge branch 'patch/JAL-3840_2_11_1_4' into releases/Release_2_11_1_Branch

JAL-3840 don’t update the modal residue count for gaps

    • -1
    • +6