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JAL-1400 default JalviewLite build is signed applet with sandbox permissions

JAL-957 first attempt to build examples with jbake

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Merge branch 'WIP_fix_JAL-1423' into Release_2_8_Branch

JAL-1400 specify minimum 1.6 JRE

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Merge branch 'Release_2_8_Branch' into WIP_fix_JAL-1423

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examples/linkedapplets_ng.html

JAL-1400 sign the applet with manifest attributes for Java 1.6 and Java 1.7

JAL-1400 signed applets generally run with all permissions since 2014

Merge branch 'JAL-1422_srs_r281' into develop

Merge branch 'JAL-1422_srs_r281' into Release_2_8_1_Branch

Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branch_i18n

Merge branch 'JAL-1422_srs' into JAL-1422_srs_r281

Conflicts:

examples/linkedapplets_ng.html

Merge branch 'JAL-1422_srs' into Release_2_8_Branch

Conflicts:

examples/linkedapplets_ng.html

JAL-1422 update any existing configuration to replace SRS with EMBL-EBI Search link

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    /src/jalview/appletgui/IdPanel.java
JAL-1422 change default link to EMBL-EBI Search

JAL-1422 remove SRS and expasy links and replace with EMBL-EBI Search and Uniprot links in applet examples

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Merge branch 'fix_JAL-1423' into develop

Merge branch 'fix_JAL-1423' into Release_2_8_1_Branch

Merge branch 'fix_JAL-1423' into Release_2_8_Branch