jalview

Clone Tools

Stats

Commits this week: 0
Total Committers: 73
Last Commit:
Commits this week: 0

Lines of code count not available

Commit Activity

Commits By Day In Week
52 week commits volume
Commits By Day In Week
Commits by day
Commits By Day In Week
Commits by hour
Commits By Hour In Day
Commit calendar
 

Most active committers (90 days)

loading
loading
  • last updated a few seconds ago
All Commits Reviews
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
Friday 11 Dec 2020
2:33 pm

Mateusz Warowny

JAL-3690 Web services and interactive workers somewhat working.

Options
    • -1
    • +3
    /src/jalview/bin/Jalview.java
    • -1
    • +2
    /src/jalview/gui/AlignFrame.java
    • -0
    • +4
    /src/jalview/gui/Desktop.java
    • -1
    • +1
    /src/jalview/jbgui/GAlignFrame.java
    • -8
    • +0
    /swingjs/README.txt
    • binary
    /swingjs/SwingJS-site.zip
    • -0
    • +1541
    /swingjs/differences.txt
    • binary
    /swingjs/net.sf.j2s.core-j11.jar
    • binary
    /swingjs/net.sf.j2s.core.jar
    • -1
    • +1
    /swingjs/timestamp
    • -10
    • +0
    /swingjs/ver/3.2.4/DEV_NOTES.txt
    • binary
    /swingjs/ver/3.2.4/SwingJS-site.zip
    • -395
    • +0
    /swingjs/ver/3.2.4/_j2sclasslist.txt
    • binary
    /swingjs/ver/3.2.4/net.sf.j2s.core.jar
    • -1
    • +0
    /swingjs/ver/3.2.4/timestamp
  16. … 27 more files in changeset.
12:44 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3612 use _last_ drawn colour per feature type in Overview

Options
    • -1
    • +6
    /src/jalview/renderer/seqfeatures/FeatureRenderer.java
    • -34
    • +54
    /test/jalview/renderer/seqfeatures/FeatureColourFinderTest.java
7:51 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-1713 fix typo; overview in project with open overview in preferences

Options
    • -5
    • +4
    /src/jalview/gui/AlignFrame.java
    • -1
    • +1
    /src/jalview/renderer/OverviewResColourFinder.java
Thursday 10 Dec 2020
7:56 pm

Ben Soares

Merge branch 'task/JAL-3594_updated--CHANNEL_cosmetics' into develop

Options
7:53 pm

Ben Soares

JAL-3594 Better Jalview Develop banner

Options
    • binary
    /utils/channels/develop/images/jalview_develop_banner.xcf
    • binary
    /utils/channels/develop/resources/images/jalview_develop_banner.png
    • binary
    /utils/channels/test-release/images/jalview_test-release_banner.xcf
    • -1
    • +1
    /utils/channels/test-release/resources/channel_properties
    • binary
    /utils/channels/test-release/resources/images/jalview_banner.png
    • binary
    /utils/channels/test-release/resources/images/jalview_test-release_banner.png
5:50 pm

Jim Procter

JAL-3223 - update swingjs to 3.2.9-j11

Options
    • binary
    /swingjs/SwingJS-site.zip
    • -0
    • +61
    /swingjs/differences.txt
    • binary
    /swingjs/net.sf.j2s.core-j11.jar
    • binary
    /swingjs/net.sf.j2s.core.jar
    • -1
    • +1
    /swingjs/timestamp
    • binary
    /swingjs/ver/3.2.7/SwingJS-site.zip
    • binary
    /swingjs/ver/3.2.8/SwingJS-site.zip
    • binary
    /swingjs/ver/3.2.9-j11/SwingJS-site.zip
    • -0
    • +4
    /swingjs/ver/3.2.9-j11/differences.txt
    • binary
    /swingjs/ver/3.2.9-j11/net.sf.j2s.core-j11.jar
    • -1
    • +1
    /swingjs/ver/3.2.9-j11/timestamp
    • binary
    /swingjs/ver/3.2.9/SwingJS-site.zip
    • -0
    • +61
    /swingjs/ver/3.2.9/differences.txt
    • binary
    /swingjs/ver/3.2.9/net.sf.j2s.core.jar
    • -1
    • +1
    /swingjs/ver/3.2.9/timestamp
4:08 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3784 null the right overview reference when it is closed

Options
    • -1
    • +2
    /src/jalview/gui/AlignFrame.java
4:01 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-1713 read/set OverviewPanel geometry on parent JInternalFrame

Options
    • -11
    • +8
    /src/jalview/project/Jalview2XML.java
3:53 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-1713 save Overview title in project, don't save Overview on New View

Options
    • -0
    • +1
    /schemas/jalview.xsd
    • -15
    • +34
    /src/jalview/project/Jalview2XML.java
    • -75
    • +104
    /src/jalview/xml/binding/jalview/JalviewModel.java
    • -1
    • +1
    /src/jalview/xml/binding/jalview/package-info.java
2:56 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3119 include view name (if any) in Overview title

Options
    • -2
    • +8
    /src/jalview/gui/AlignFrame.java
1:05 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-1713 save/restore Overview in project (todo: restore geometry)

Options
    • -0
    • +32
    /src/jalview/project/Jalview2XML.java
1:04 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-1713 refactorings to allow save/restore Overview to/from project

Options
    • -3
    • +11
    /src/jalview/gui/AlignFrame.java
    • -16
    • +54
    /src/jalview/gui/OverviewCanvas.java
    • -12
    • +21
    /src/jalview/gui/OverviewPanel.java
    • -30
    • +23
    /src/jalview/gui/Preferences.java
    • -1
    • +1
    /src/jalview/renderer/OverviewRenderer.java
    • -45
    • +59
    /src/jalview/renderer/OverviewResColourFinder.java
    • -6
    • +7
    /test/jalview/renderer/OverviewRendererTest.java
    • -49
    • +36
    /test/jalview/renderer/OverviewResColourFinderTest.java
1:02 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-1713 schema and JAXB changes to save Overview in project file

Options
    • -0
    • +9
    /schemas/jalview.xsd
    • -2
    • +292
    /src/jalview/xml/binding/jalview/JalviewModel.java
    • -1
    • +9
    /src/jalview/xml/binding/jalview/ObjectFactory.java
    • -1
    • +1
    /src/jalview/xml/binding/jalview/package-info.java
10:49 am

Ben Soares

JAL-3594 Documentation added to building.md for using the utils/channels/... folders

Options
    • -4
    • +28
    /doc/building.md
10:05 am

Ben Soares

Merge branch 'task/JAL-3594_updated--CHANNEL_cosmetics' into develop

Options
9:56 am

Ben Soares

Merge branch 'merge/develop_and_rebase_squashed_merge_JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch' into develop

Options
    • -0
    • +5
    /build.gradle
Wednesday 09 Dec 2020
8:21 pm

Ben Soares

JAL-3594 Improved About banners for develop and test-release

Options
    • binary
    /utils/channels/develop/images/jalview_develop_banner.xcf
    • binary
    /utils/channels/develop/resources/images/jalview_develop_banner.png
    • binary
    /utils/channels/test-release/resources/images/jalview_banner.png
6:23 pm

Ben Soares

JAL-3594 Images for splash screen

Options
    • binary
    /resources/default_images/UoD_banner-28.png
    • binary
    /resources/default_images/UoD_banner-30.png
    • binary
    /resources/default_images/UoD_banner-32.png
    • binary
    /resources/default_images/UoD_banner.png
    • binary
    /resources/default_images/barton_group-28.png
    • binary
    /resources/default_images/barton_group-30.png
    • binary
    /resources/default_images/barton_group-32.png
    • binary
    /resources/default_images/barton_group-62.png
    • -11
    • +37
    /src/jalview/gui/Desktop.java
    • -5
    • +35
    /src/jalview/gui/SplashScreen.java
    • -2
    • +31
    /src/jalview/util/ChannelProperties.java
    • binary
    /utils/channels/default/images/UoD_banner-28.png
    • binary
    /utils/channels/default/images/UoD_banner-30.png
    • binary
    /utils/channels/default/images/UoD_banner-32.png
    • binary
    /utils/channels/default/images/UoD_banner-65.png
  16. … 51 more files in changeset.
1:57 pm

Ben Soares

JAL-3594 JAL-3728 Added taskbar icons to desktop and Java console. Changed "Jalview" to "app_name" in various appropriate places

Options
    • -8
    • +14
    /src/jalview/bin/Cache.java
    • -4
    • +11
    /src/jalview/gui/Console.java
    • -0
    • +3
    /src/jalview/gui/Desktop.java
    • -1
    • +1
    /src/jalview/gui/SplashScreen.java
    • -39
    • +94
    /src/jalview/util/ChannelProperties.java
Tuesday 08 Dec 2020
8:42 pm

Ben Soares

Merge branch 'merge/develop_and_rebase_squashed_merge_JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch' into merge/JAL-3594_and_new_develop_issues

Options
    • -0
    • +5
    /build.gradle
    • -111
    • +141
    /src/jalview/bin/Jalview.java
    • -1
    • +4
    /src/jalview/bin/Launcher.java
    • -9
    • +50
    /src/jalview/gui/Desktop.java
6:17 pm

Ben Soares

JAL-3594 Change main window title

Options
    • -2
    • +6
    /src/jalview/bin/Launcher.java
    • -80
    • +85
    /src/jalview/gui/Desktop.java
    • -1
    • +1
    /utils/channels/default/resources/channel_properties
    • -0
    • +10
    /utils/install4j/README-DMG_creation.md
12:56 am

Ben Soares

JAL-3594 DMG fixes

Options
    • -2
    • +2
    /build.gradle
    • -2
    • +2
    /utils/channels/default/channel_gradle.properties
    • binary
    /utils/channels/default/images/jalview_default_dmg_DS_Store
    • binary
    /utils/channels/default/images/jalview_default_dmg_background-72dpi.png
    • binary
    /utils/channels/default/images/jalview_default_dmg_background.png
    • -1
    • +1
    /utils/channels/develop/channel_gradle.properties
    • binary
    /utils/channels/develop/images/jalview_develop_dmg_DS_Store
    • binary
    /utils/channels/develop/images/jalview_develop_dmg_background-72dpi.png
    • binary
    /utils/channels/develop/images/jalview_develop_dmg_background.png
    • -1
    • +1
    /utils/channels/release/channel_gradle.properties
    • binary
    /utils/channels/release/images/jalview_dmg_DS_Store
    • binary
    /utils/channels/release/images/jalview_dmg_background-72dpi.png
    • -2
    • +2
    /utils/channels/test-release/channel_gradle.properties
    • binary
    /utils/channels/test-release/images/jalview_test-release_dmg_DS_Store
    • binary
    /utils/channels/test-release/images/jalview_test-release_dmg_background-72dpi.png
    • -2
    • +2
    /utils/install4j/README-DMG_background_image_creation.md
    • -1
    • +1
    /utils/install4j/README-DMG_creation.md
Monday 07 Dec 2020
9:22 pm

Ben Soares

JAL-3594 added BG logo. Changed some named Jalviews to app_name property. Added test-release and default channels.

Options
    • -13
    • +7
    /build.gradle
    • -1
    • +4
    /gradle.properties
    • binary
    /resources/default_images/barton_group-62.png
    • -1
    • +2
    /src/jalview/bin/Jalview.java
    • -1
    • +2
    /src/jalview/bin/Launcher.java
    • -0
    • +1
    /src/jalview/util/ChannelProperties.java
    • -0
    • +22
    /utils/channels/default/channel_gradle.properties
    • binary
    /utils/channels/default/images/barton_group-512.png
    • binary
    /utils/channels/default/images/barton_group-62.png
    • binary
    /utils/channels/default/images/barton_group-white-512.png
    • binary
    /utils/channels/default/images/barton_group-white-62.png
    • -0
    • +128
    /utils/channels/default/images/barton_group-white.svg
    • -0
    • +75
    /utils/channels/default/images/barton_group.svg
    • binary
    /utils/channels/default/images/jalview_default_dmg_DS_Store
    • binary
    /utils/channels/default/images/jalview_default_dmg_background.png
  16. … 99 more files in changeset.
1:29 pm

Ben Soares

JAL-3754 Fixed jar task creating strange dir because of outputs.file()

Options
    • -2
    • +3
    /build.gradle
1:29 pm

Ben Soares

JAL-3754 Fixed jar task creating strange dir because of outputs.file()

Options
    • -2
    • +3
    /build.gradle
Sunday 06 Dec 2020
1:36 pm

Jim Procter

Revert "JAL-3690 for a laugh, lets enable web services!"

This reverts commit 026057e76ba227a13968eb0ff3c01dc6b87145f4.

Options
    • -3
    • +1
    /src/jalview/bin/Jalview.java
1:35 pm

Jim Procter

JAL-3690 update to swingjs patch 3.2.9

Options
    • -257
    • +298
    /doc/building.html
    • binary
    /swingjs/SwingJS-site.zip
    • -1
    • +1
    /swingjs/timestamp
    • binary
    /swingjs/ver/3.2.7/SwingJS-site.zip
    • binary
    /swingjs/ver/3.2.8/SwingJS-site.zip
    • binary
    /swingjs/ver/3.2.9-j11/SwingJS-site.zip
    • -0
    • +1484
    /swingjs/ver/3.2.9-j11/differences.txt
    • binary
    /swingjs/ver/3.2.9-j11/net.sf.j2s.core-j11.jar
    • binary
    /swingjs/ver/3.2.9/SwingJS-site.zip
    • -0
    • +1484
    /swingjs/ver/3.2.9/differences.txt
    • -1
    • +1
    /swingjs/ver/3.2.9/timestamp
Saturday 05 Dec 2020
9:17 pm

Ben Soares

JAL-3594 Default values for channel properties defined in code as fallback

Options
    • binary
    /resources/default_images/UoD_banner.png
    • binary
    /resources/default_images/jalview_banner.png
    • binary
    /resources/default_images/jalview_logo-128.png
    • binary
    /resources/default_images/jalview_logo-16.png
    • binary
    /resources/default_images/jalview_logo-256.png
    • binary
    /resources/default_images/jalview_logo-32.png
    • binary
    /resources/default_images/jalview_logo-38.png
    • binary
    /resources/default_images/jalview_logo-48.png
    • binary
    /resources/default_images/jalview_logo-512.png
    • binary
    /resources/default_images/jalview_logo-64.png
    • binary
    /resources/default_images/rotatable_jalview_logo-38.png
    • -9
    • +49
    /src/jalview/util/ChannelProperties.java
    • -0
    • +1
    /utils/channels/develop/resources/channel_properties
    • -0
    • +1
    /utils/channels/release/resources/channel_properties
11:54 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3739 catch parameter errors and report to the user

Options
    • -2
    • +1
    /resources/lang/Messages.properties
    • -2
    • +1
    /resources/lang/Messages_es.properties
    • -30
    • +42
    /src/jalview/ws/jws2/MsaWSClient.java
    • -7
    • +6
    /src/jalview/ws/jws2/dm/JabaOption.java
11:53 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3739 validate input on tab out of field

Options
    • -7
    • +17
    /src/jalview/gui/OptsAndParamsPage.java