jalview

Clone Tools

Stats

Commits this week: 3
Total Committers: 73
Last Commit:
Commits this week: 3

Lines of code count not available

Commit Activity

Commits By Day In Week
52 week commits volume
Commits By Day In Week
Commits by day
Commits By Day In Week
Commits by hour
Commits By Hour In Day
Commit calendar
 

Most active committers (90 days)

loading
loading
  • last updated a few seconds ago
All Commits Reviews
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
Friday 25 Sep 2020
9:39 am

Ben Soares

JAL-3577 Removed default JALVIEW_VERSION from gradle.properties. Now being set by build.gradle

Options
    • -1
    • +2
    /gradle.properties
9:39 am

Ben Soares

JAL-3577 Removed default JALVIEW_VERSION from gradle.properties. Now being set by build.gradle

Options
    • -1
    • +2
    /gradle.properties
8:16 am

Jim Procter

JAL-3758 tweak what’s new for 2.11.1.2!

Options
    • -5
    • +6
    /help/help/html/whatsNew.html
8:05 am

Jim Procter

JAL-3758 release Fri 25th Sep

Options
    • -1
    • +1
    /help/help/html/releases.html
7:45 am

Jim Procter

Merge branch 'releases/Release_2_11_1_Branch' of http://source.jalview.org/git/jalview into releases/Release_2_11_1_Branch

Options
Thursday 24 Sep 2020
6:16 pm

Ben Soares

JAL-3577 Quick fix adding quotation marks for findProperty("JALVIEW_VERSION")==null...

Options
    • -1
    • +1
    /build.gradle
6:16 pm

Ben Soares

JAL-3577 Quick fix adding quotation marks for findProperty("JALVIEW_VERSION")==null...

Options
    • -1
    • +1
    /build.gradle
6:16 pm

Ben Soares

JAL-3577 Quick fix adding quotation marks for findProperty("JALVIEW_VERSION")==null...

Options
    • -1
    • +1
    /build.gradle
2:38 pm

Jim Procter

JAL-3758 2.11.1.2 patch release notes and version bump

Options
    • -1
    • +1
    /RELEASE
    • -0
    • +18
    /help/help/html/releases.html
2:36 pm

Jim Procter

JAL-3757 JAL-3689 use AppletFormat.checkProtocol to resolve startup file’s retrieval protocol (sorry @benzoid for finessing you !)

Options
    • -6
    • +1
    /src/jalview/bin/Jalview.java
2:36 pm

Jim Procter

JAL-3757 JAL-3689 use AppletFormat.checkProtocol to resolve startup file’s retrieval protocol (sorry @benzoid for finessing you !)

Options
    • -6
    • +1
    /src/jalview/bin/Jalview.java
11:55 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3751 only merge strictly contiguous ranges of mappings

Options
    • -58
    • +19
    /src/jalview/util/MapList.java
    • -112
    • +88
    /test/jalview/util/MapListTest.java
    • -10
    • +17
    /test/jalview/util/MappingUtilsTest.java
11:55 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3751 only merge strictly contiguous ranges of mappings

Options
    • -58
    • +19
    /src/jalview/util/MapList.java
    • -112
    • +88
    /test/jalview/util/MapListTest.java
    • -10
    • +17
    /test/jalview/util/MappingUtilsTest.java
11:55 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3751 only merge strictly contiguous ranges of mappings

Options
    • -58
    • +19
    /src/jalview/util/MapList.java
    • -112
    • +88
    /test/jalview/util/MapListTest.java
    • -0
    • +7
    /test/jalview/util/MappingUtilsTest.java
11:55 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3751 only merge strictly contiguous ranges of mappings

Options
    • -58
    • +19
    /src/jalview/util/MapList.java
    • -112
    • +88
    /test/jalview/util/MapListTest.java
    • -0
    • +7
    /test/jalview/util/MappingUtilsTest.java
Wednesday 23 Sep 2020
11:41 pm

Ben Soares

JAL-3757 JAL-3689 Fixed checks for URLs by adding checks for https:// as well as http://

Options
    • -1
    • +1
    /src/jalview/bin/Jalview.java
11:41 pm

Ben Soares

JAL-3757 JAL-3689 Fixed checks for URLs by adding checks for https:// as well as http://

Options
    • -1
    • +2
    /src/jalview/bin/Jalview.java
5:34 pm

Jim Procter

JAL-3748 not testing for sequence’s containment in mapped range breaks CDS reconstruction but allows testAlignProteinAsDna_incompleteStartCodon to pass

Options
    • -1
    • +3
    /src/jalview/datamodel/AlignedCodonFrame.java
5:19 pm

Ben Soares

Merge branch 'develop' into bug/JAL-3753_resources_duplicated_in_jalview_jar

Options
5:17 pm

Jim Procter

JAL-3748 fix compilation error

Options
    • -1
    • +0
    /src/jalview/datamodel/AlignedCodonFrame.java
5:11 pm

Jim Procter

JAL-3748 maximal test for JAL-3748 using covid19 CDS/Protein

Options
    • -0
    • +34
    /test/jalview/gui/SplitFrameTest.java
4:49 pm

Ben Soares

JAL-3477 Added 10k leeway to amount of memory reserved for OS test for float rounding errors (needed to fix failing test)

Options
    • -11
    • +19
    /test/jalview/bin/MemorySettingTest.java
4:48 pm

Ben Soares

JAL-3753 Resources seen in tests and appropriate filters now being used as file opt-in rather than opt-out.

Options
    • -19
    • +28
    /build.gradle
4:39 pm

Jim Procter

JAL-3748 more tests verifying reconstruction of AlignemntView for linked CDS/Protein alignment and selected region

Options
    • -1
    • +6
    /test/jalview/gui/SplitFrameTest.java
4:38 pm

Jim Procter

JAL-3748 reusable assert to trace specific issues with recovering the correct Sequence/Mapping (highlights points of failure for AlignmentUtilsTests with patch

Options
    • -1
    • +44
    /test/jalview/analysis/AlignmentUtilsTests.java
4:35 pm

Jim Procter

JAL-3748 allow AlignedCodonFrame.covers to optionally only require coverage for either originating or mapped sequence.

Options
    • -16
    • +45
    /src/jalview/datamodel/AlignedCodonFrame.java
Tuesday 22 Sep 2020
3:30 pm

Jim Procter

JAL-3748 test data for SplitFrameTest

Options
    • binary
    /examples/testdata/MN908947.jvp
3:09 pm

Jim Procter

JAL-3748 don’t trash start/end on SequenceI reconstructed from a SeqCigar via SeqsetUtils.SeqCharacterUnhash

Options
    • -3
    • +17
    /src/jalview/analysis/SeqsetUtils.java
    • -1
    • +1
    /src/jalview/datamodel/SeqCigar.java
2:45 pm

Jim Procter

JAL-3748 simple test for SeqCigar preservation of start/end and name for different ways of constructing SeqCigar and reconstructing alignment sequences

Options
    • -0
    • +23
    /test/jalview/datamodel/SeqCigarTest.java
2:30 pm

Jim Procter

JAL-3748 additional asserts to verify start/end after reconstructing sequence from seqCigar

Options
    • -3
    • +11
    /test/jalview/datamodel/SeqCigarTest.java