jalview

Clone Tools
  • last updated a few seconds ago
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
JAL-3248 Archived old README. Added new README to point user to doc/building.md

    • -0
    • +47
    /doc/old_ant_build_README
JAL-3743 Fixed NullPointerExceptions happening with linkCheck task when gradle >= 6.6

JAL-3743 JAL-3745 Fixed NullPointerExceptions happening with linkCheck and jalviewjsTranspile tasks when gradle >= 6.6

JAL-3743 JAL-3745 Fixed NullPointerExceptions happening with linkCheck and jalviewjsTranspile tasks when gradle >= 6.6

JAL-3833 Allow setHiDPI and setHiDPIScale to work more usefully in real life

JAL-3833 cap the scaling used by HiDPISetting for incorrect DPI values or incorrect height/width values

JAL-3833 cap the scaling used by HiDPISetting for incorrect DPI values or incorrect height/width values

JAL-3830 Improved jalview.bat to find either pwsh.exe or powershell.exe, and give better messages to the user

JAL-3832 Gui working, with 3DBeacons parameters

    • -3
    • +3
    /resources/fts/tdbeacons_data_columns.txt
JAL-3832 Gui working, with 3DBeacons parameters

    • -3
    • +3
    /resources/fts/tdbeacons_data_columns.txt
Merge branch 'arnaud/develop' into arnaud/JAL-3929_spike, to insert the previous changes

Merge branch 'arnaud/develop' into arnaud/JAL-3929_spike, to insert the previous changes

JAL-3929 forgot to add in the dummy 3d-beacons db proxy

    • -0
    • +521
    /src/jalview/ws/dbsources/TDBeacons.java
JAL-3829 forgot to add in the dummy 3d-beacons db proxy

    • -0
    • +521
    /src/jalview/ws/dbsources/TDBeacons.java
JAL-3832 dummy 3d-beacons database client and code to create the TDBeaconsFTSPanel via the sequence fetcher dropdown menu

JAL-3829 more testing wit tdbeacons data columns and FTSclient

    • -1
    • +4
    /resources/fts/tdbeacons_data_columns.txt
    • -2
    • +7
    /test/jalview/gui/StructureChooserTest.java
JAL-3829 attempt to fix my changes to follow the Jira issue

    • -0
    • +3
    /resources/fts/tdbeacons_data_columns.txt
JAL-3830 BAT file wrapper around powershell, so jalview works in command prompt. Added install4j option for installer to add Jalview's bin dir to Path in Windows. Added install4j option to create symlink to bash script to user's local bin (first of ~/bin, ~/.local/bin, ~/local/bin, ~/opt/bin that exists. First two of these usually automatically in PATH).

    • -0
    • +4
    /utils/getdown/bin/jalview.bat
JAL-3830 Follow all SymbolicLinks in Windows powershell wrapper

fixed last commit

Request now parses the whole structures, need to fix the result

JAL-3830 delete channel.props and channel.propsv when uninstalling

JAL-3633 new getdown jars

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3633 refactored/simplified LaunchUtils code

    • -6
    • +17
    /src/jalview/util/ChannelProperties.java
    • -0
    • +56
    /src/jalview/util/LaunchUtils.java
TDB.executeRequest fix & test passed

    • -4
    • +4
    /src/jalview/fts/core/FTSRestResponse.java
Added (and passed !)all the FTS tests from test.fts.core

Created 3Dbeacons data_columns.txt Test passed for data columns

    • -0
    • +44
    /resources/fts/tdbeacons_data_columns.txt
    • -0
    • +10
    /src/jalview/fts/core/FTSRestResponse.java
JAL-3633 new getdown jars

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3633 getdown reads jalview_properties for proxy settings

JAL-3830 Moved wrappers to bin/jalview.* and make a symlink bin/jalview. Install4j script now jalviewg

    • -0
    • +50
    /utils/getdown/bin/jalview.ps1
    • -0
    • +132
    /utils/getdown/bin/jalview.sh