jalview

README

Clone Tools

Stats

Commits this week: 0
Total Committers: 10
Last Commit: 26 Apr
Commits this week: 0

Lines of code count not available

Commit Activity

Commits By Day In Week
52 week commits volume
Commits By Day In Week
Commits by day
Commits By Day In Week
Commits by hour
Commits By Hour In Day
Commit calendar
 

Most active committers (90 days)

loading
loading
  • last updated a few seconds ago
All Commits Reviews
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
Monday 26 Apr
8:00 pm

Ben Soares

JAL-3248 Moved old README to doc/old_README and put pointers in new README for deskopt application building and JalviewJS building

Options
    • -71
    • +4
    /README
  2. … 1 more file in changeset.
6:27 pm

Ben Soares

JAL-3248 Archived old README. Added new README to point user to doc/building.md

Options
    • -45
    • +1
    /README
  2. … 1 more file in changeset.
Wednesday 09 Oct 2019
2:51 pm

Ben Soares

JAL-3456 fixed some backticks in README.md

Options
    • -82
    • +0
    /README
  2. … 1 more file in changeset.
1:53 pm

Ben Soares

JAL-3210 JAL-3456 Mothballing work done on using goomph for jalviewjs build

Options
    • -0
    • +2
    /README
1:53 pm

Ben Soares

JAL-3210 JAL-3456 Mothballing work done on using goomph for jalviewjs build

Options
    • -7
    • +65
    /README
  2. … 4 more files in changeset.
Tuesday 03 Sep 2019
6:07 pm

Ben Soares

JAL-3210 gradle jalviewjsServer now working. Up to date src and swingjs from Jalview-JS/...applet branch. Transpiles and launches.

Options
    • -3
    • +13
    /README
  2. … 16 more files in changeset.
Friday 30 Aug 2019
5:19 pm

Ben Soares

JAL-3210 Improvements to eclipse detection. New src tree and SwingJS updated from the applet branch. AND IT WORKS (sometimes)

Options
    • -1
    • +1
    /README
  2. … 343 more files in changeset.
Wednesday 28 Aug 2019
1:23 pm

Ben Soares

JAL-3210 Now includes creating the .project, .classpath and .settings as a depenedency

Options
    • -3
    • +1
    /README
  2. … 3 more files in changeset.
Tuesday 27 Aug 2019
10:20 pm

Ben Soares

JAL-3210 Barebones gradle/buildship/eclipse. See README

Options
    • -64
    • +6
    /README
  2. … 1990 more files in changeset.
Wednesday 17 Oct 2018
4:52 pm

Jim Procter

Merge branch 'feature/JAL-3063JAXB' into Jalview-BH/JAL-3026-JAL-3063-JAXB

Options
    • -3
    • +8
    /README
  2. … 21 more files in changeset.
Wednesday 12 Sep 2018
12:13 pm

Jim Procter

Wednesday 05 Sep 2018
9:01 am

Jim Procter

JAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7f64178c9a739 to exclude .settings/..groovy Added notes to the instructions, also adjusted the jalviewDesktopRunner test to lookup OS and use ';' or ':' accordingly. All the CommandLineOperations tests failed on my (hastily set up) linux box, so I'm committing and will test on MacOS too.

Options
    • -3
    • +8
    /README
  2. … 3 more files in changeset.
Tuesday 04 Sep 2018
4:17 pm

Ben Soares

Added notes to the instructions, also adjusted the jalviewDesktopRunner test to lookup OS and use ';' or ':' accordingly. All the CommandLineOperations tests failed on my (hastily set up) linux box, so I'm committing and will test on MacOS too.

Options
    • -3
    • +8
    /README
  2. … 4 more files in changeset.
Thursday 26 Jul 2018
11:36 am

Jim Procter

should really explain what path to classes is as well as path to lib here

should really explain what path to classes is as well as path to lib here

11:00 am

Jim Procter

have you checked this works on Windows ? If it doesn't we should provide an alternative commandline

have you checked this works on Windows ? If it doesn't we should provide an alternative commandline

10:31 am

Jim Procter

JAL-3065
JAL-3065
Tuesday 17 Jul 2018
12:17 pm

Ben Soares

JAL-3065

Change in all repo documentation advising launching Jalview with the

-Djava.ext.dirs=LIB

option to now use

-classpath="LIB/*:..."

instead. Using the -Djava.ext.dirs= option masks the JRE's own ext dir

which contains the sunjce packages. This manifests as cipher problems

when accessing https resources (in particular https://www.ebi.ac.uk/...

when searching for PDB structures, activated when choosing Sequence->"3D

Structure Data...")

Options
    • -2
    • +2
    /README
  2. … 4 more files in changeset.
Monday 09 Jul 2018
11:19 am

Jim Procter

JAL-3026 'dropins' !

Options
    • -1
    • +5
    /README
11:16 am

Jim Procter

JAL-3026 update README with instructions on setting up Eclipse for java2script and running unzip-to-site to update the site directory after a build.

Options
    • -0
    • +21
    /README
Tuesday 07 Nov 2017
11:50 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2069 update spike branch with latest

Options
    • -1
    • +4
    /README
  2. … 29 more files in changeset.
Friday 03 Nov 2017
3:56 pm

Jim Procter

JAL-2818 modified README for launching jalview from source build

Options
    • -1
    • +4
    /README
Monday 15 Dec 2014
6:34 am

Jim Procter <jprocter@dundee.ac.uk>

JAL-1620 version bump and release notes

Options
    • -1
    • +1
    /README
  2. … 835 more files in changeset.
Monday 29 Aug 2011
4:29 pm

jprocter <jprocter@compbio.dundee.ac.uk>

added notes on third party library licencing and updated netbeans builder library deps

Options
    • -1
    • +3
    /README
  2. … 4 more files in changeset.
Thursday 19 May 2011
2:29 pm

jprocter <jprocter@compbio.dundee.ac.uk>

Revert "just a test"

This reverts commit 0f56a75191c95a02b5f5ee90d9a6a57f72b0433b.

Options
    • -1
    • +0
    /README
Wednesday 18 May 2011
3:28 pm

jprocter <jprocter@compbio.dundee.ac.uk>

just a test

Options
    • -0
    • +1
    /README
Thursday 23 Sep 2010
8:01 am

jprocter <Jim Procter>

Jalview 2.6 source licence

Options
    • -33
    • +36
    /README
  2. … 614 more files in changeset.
Wednesday 05 Apr 2006
12:38 pm

amwaterhouse <Andrew Waterhouse>

Note on build target being usage

Options
    • -1
    • +2
    /README
  2. … 1 more file in changeset.
Tuesday 09 Aug 2005
6:07 pm

amwaterhouse <Andrew Waterhouse>

Add notes on proxy settings

Options
    • -5
    • +10
    /README
Monday 18 Jul 2005
5:15 pm

amwaterhouse <Andrew Waterhouse>

backslash irrelevant in java

Options
    • -1
    • +1
    /README
12:18 pm

amwaterhouse <Andrew Waterhouse>

Remove .txt, add command line instruction

Options
    • -0
    • +28
    /README
  2. … 1 more file in changeset.