jalview

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Last Commit: 09 Mar
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Wednesday 09 Mar
10:11 am

Jim Procter <j.procter@dundee.ac.uk>

JAL-3746 JAL-3841 fix README typo

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Tuesday 08 Mar
8:39 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3746 JAL-3841 new README and finalising 2.11.2.0 release notes

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  2. … 1 more file in changeset.
Monday 26 Apr 2021
8:00 pm

Ben Soares

JAL-3248 Moved old README to doc/old_README and put pointers in new README for deskopt application building and JalviewJS building

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6:27 pm

Ben Soares

JAL-3248 Archived old README. Added new README to point user to doc/building.md

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Wednesday 09 Oct 2019
2:51 pm

Ben Soares

JAL-3456 fixed some backticks in README.md

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1:53 pm

Ben Soares

JAL-3210 JAL-3456 Mothballing work done on using goomph for jalviewjs build

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1:53 pm

Ben Soares

JAL-3210 JAL-3456 Mothballing work done on using goomph for jalviewjs build

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    /README
  2. … 4 more files in changeset.
Tuesday 03 Sep 2019
6:07 pm

Ben Soares

JAL-3210 gradle jalviewjsServer now working. Up to date src and swingjs from Jalview-JS/...applet branch. Transpiles and launches.

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  2. … 16 more files in changeset.
Friday 30 Aug 2019
5:19 pm

Ben Soares

JAL-3210 Improvements to eclipse detection. New src tree and SwingJS updated from the applet branch. AND IT WORKS (sometimes)

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Wednesday 28 Aug 2019
1:23 pm

Ben Soares

JAL-3210 Now includes creating the .project, .classpath and .settings as a depenedency

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Tuesday 27 Aug 2019
10:20 pm

Ben Soares

JAL-3210 Barebones gradle/buildship/eclipse. See README

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Wednesday 17 Oct 2018
4:52 pm

Jim Procter

Merge branch 'feature/JAL-3063JAXB' into Jalview-BH/JAL-3026-JAL-3063-JAXB

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Wednesday 12 Sep 2018
12:13 pm

Jim Procter

Wednesday 05 Sep 2018
9:01 am

Jim Procter

JAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7f64178c9a739 to exclude .settings/..groovy Added notes to the instructions, also adjusted the jalviewDesktopRunner test to lookup OS and use ';' or ':' accordingly. All the CommandLineOperations tests failed on my (hastily set up) linux box, so I'm committing and will test on MacOS too.

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Tuesday 04 Sep 2018
4:17 pm

Ben Soares

Added notes to the instructions, also adjusted the jalviewDesktopRunner test to lookup OS and use ';' or ':' accordingly. All the CommandLineOperations tests failed on my (hastily set up) linux box, so I'm committing and will test on MacOS too.

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Thursday 26 Jul 2018
11:36 am

Jim Procter

should really explain what path to classes is as well as path to lib here

should really explain what path to classes is as well as path to lib here

11:00 am

Jim Procter

have you checked this works on Windows ? If it doesn't we should provide an alternative commandline

have you checked this works on Windows ? If it doesn't we should provide an alternative commandline

10:31 am

Jim Procter

JAL-3065
JAL-3065
Tuesday 17 Jul 2018
12:17 pm

Ben Soares

JAL-3065

Change in all repo documentation advising launching Jalview with the

-Djava.ext.dirs=LIB

option to now use

-classpath="LIB/*:..."

instead. Using the -Djava.ext.dirs= option masks the JRE's own ext dir

which contains the sunjce packages. This manifests as cipher problems

when accessing https resources (in particular https://www.ebi.ac.uk/...

when searching for PDB structures, activated when choosing Sequence->"3D

Structure Data...")

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Monday 09 Jul 2018
11:19 am

Jim Procter

JAL-3026 'dropins' !

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    /README
11:16 am

Jim Procter

JAL-3026 update README with instructions on setting up Eclipse for java2script and running unzip-to-site to update the site directory after a build.

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Tuesday 07 Nov 2017
11:50 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2069 update spike branch with latest

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  2. … 29 more files in changeset.
Friday 03 Nov 2017
3:56 pm

Jim Procter

JAL-2818 modified README for launching jalview from source build

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Monday 15 Dec 2014
6:34 am

Jim Procter <jprocter@dundee.ac.uk>

JAL-1620 version bump and release notes

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  2. … 835 more files in changeset.
Monday 29 Aug 2011
4:29 pm

jprocter <jprocter@compbio.dundee.ac.uk>

added notes on third party library licencing and updated netbeans builder library deps

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Thursday 19 May 2011
2:29 pm

jprocter <jprocter@compbio.dundee.ac.uk>

Revert "just a test"

This reverts commit 0f56a75191c95a02b5f5ee90d9a6a57f72b0433b.

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Wednesday 18 May 2011
3:28 pm

jprocter <jprocter@compbio.dundee.ac.uk>

just a test

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Thursday 23 Sep 2010
8:01 am

jprocter <Jim Procter>

Jalview 2.6 source licence

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Wednesday 05 Apr 2006
12:38 pm

amwaterhouse <Andrew Waterhouse>

Note on build target being usage

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Tuesday 09 Aug 2005
6:07 pm

amwaterhouse <Andrew Waterhouse>

Add notes on proxy settings

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    /README