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JAL-3210 Barebones gradle/buildship/eclipse. See README

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JAL-2089 patch broken merge to master for Release 2.10.0b1

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JAL-2089 Merge branch releases/Release_2_10_Branch to master

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JAL-1986 JAL-1996 separated out appletDeploment page from appletParameter page, updated the applet deployment docs, and updated necessary links. Also, having resolved JAL-1994, I've updated the json jars in all applet example pages.

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JAL-1925 update source version in license

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JAL-1894 update year/version in copyright

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JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

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JAL-857 removed 'development' as active link and added links to decorated html equivalent pages when the example pages are viewed directly

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JAL-857 updated examples directory web pages to be dynamicaly decorated with jalview websites header and footer

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