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JAL-3210 Barebones gradle/buildship/eclipse. See README

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JAL-2189 license header

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JAL-857 removed 'development' as active link and added links to decorated html equivalent pages when the example pages are viewed directly

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updated examples index page

JAL-857 updated examples directory web pages to be dynamicaly decorated with jalview websites header and footer

  1. … 19 more files in changeset.