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JAL-3210 Barebones gradle/buildship/eclipse. See README

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JAL-2277 Refactored out duplicated method - printUnwrapped() in HtmlSvgOutput, externalised facebox script, and made other minor housekeepings

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JAL-2089 patch broken merge to master for Release 2.10.0b1

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JAL-1925 update source version in license

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JAL-1894 update year/version in copyright

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Merge branch 'develop' into Release_2_9_0b1_Branch JAL-1894 update next-release branch for build system

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JAL-1859 working variable to aid inspection in debugger

JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

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JAL-857 removed 'development' as active link and added links to decorated html equivalent pages when the example pages are viewed directly

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JAL-1859 Jmol applet black background; fix _jvmols table key

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JAL-1859 Jmol linked applet updated to use Jmol2.js

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Merge branch 'features/JAL-857_dynamic-example-files' into develop

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Merge branch 'features/JAL-857_dynamic-example-files' into develop Minor tweaks due to Mungo's cleaning up of the embeddedWJmol example

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JAL-1859 jmolFindTarget not JmolFindTarget

JAL-1859 embedded Jmol applet example updated for Jmol 14.2 javascript

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JAL-857 increased callback timeout to accomodated applet load delay

JAL-857 converted jalview applet launch scripts to applet tags to prevent whole page rewriting, fixed race condition bug affecting callback method of linked/scriptable applets, and added custom layout for embeddedWJmol page to deal with whole page rewrite bug

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JAL-857 javascipt housekeeping

JAL-857 modified javascipt to read browser url on page load and redirect accordingly

JAL-857 disabled javascript page state storage in cookies

JAL-857 updated examples directory web pages to be dynamicaly decorated with jalview websites header and footer

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    ./jvcontroller.js
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JAL-1683 replace year/version strings with tokens in source

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JAL-1620 version bump and release notes

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JAL-1551 crlf changes

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JAL-1551 crlf changes due to checkout with text=auto

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JAL-1551 crlf changes due to checkout with text=auto

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JAL-1517 update copyright to version 2.8.2

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fix for JAL-1510 - workaround for IE9

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JAL-1503 update version in GPL header

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