linkedapplets_ng.html

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JAL-3210 Barebones gradle/buildship/eclipse. See README

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JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11 to Jmol-14.6.4_2016.10.26

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JAL-2089 patch broken merge to master for Release 2.10.0b1

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JAL-2089 Merge branch releases/Release_2_10_Branch to master

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JAL-1996 added notes for an alternative way to view example pages source code

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JAL-1996 added link for viewing example source codes, changed release history outline from list to table

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JAL-1996 removed quick links in example pages, added one minimal applet embedding example to applet deployment page

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JAL-1986 JAL-1996 separated out appletDeploment page from appletParameter page, updated the applet deployment docs, and updated necessary links. Also, having resolved JAL-1994, I've updated the json jars in all applet example pages.

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JAL-1925 update source version in license

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JAL-1894 update year/version in copyright

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JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

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JAL-857 revert show equivalent decoration link

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JAL-857 removed 'development' as active link and added links to decorated html equivalent pages when the example pages are viewed directly

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JAL-1859 JAL-857 updated all reference of JmolApplet-12.2.4.jar to JmolApplet-14.2.14_2015.06.11.jar

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JAL-857 converted jalview applet launch scripts to applet tags to prevent whole page rewriting, fixed race condition bug affecting callback method of linked/scriptable applets, and added custom layout for embeddedWJmol page to deal with whole page rewrite bug

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JAL-857 updated examples directory web pages to be dynamicaly decorated with jalview websites header and footer

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JAL-1683 replace year/version strings with tokens in source

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Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e' into develop

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JAL-1213 JAL-1395 add Jmol to JalviewLite classpath - need to find a way around this in the future

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JAL-1620 version bump and release notes

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JAL-1517 update copyright to version 2.8.2

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JAL-1509 use local deployJava JAL-816 reinstate hashtable include to fix regression introduced in 2.8.0b1

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JAL-1503 update version in GPL header

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Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge updating 2.8.1 with source formatting, branding, and new examples build mechanism Conflicts: build.xml examples/linkedapplets_ng.html help/helpTOC.xml src/jalview/appletgui/AlignFrame.java src/jalview/schemabinding/version2/AnnotationColours.java src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java

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Merge branch 'JAL-957_jbake' into r281_JAL-957

Conflicts:

build.xml

examples/linkedapplets_ng.html

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JAL-1432 updated copyright notices

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JAL-957 neater boilerplate link to signed/unsigned examples and shortcuts for downloading applet jars

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JAL-957 new jbake-generated example pages

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JAL-1400 numeric version numbers only for minimum jre compatibility

JAL-1400 default JalviewLite build is signed applet with sandbox permissions

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