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JAL-3210 Barebones gradle/buildship/eclipse. See README

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JAL-2234 reordered seqs (after sequence data was reordered) so files match the example project files

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JAL-2234 FER1_ARATH renamed FER2_ARATH and vice versa

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example applet and desktop application files that should be published to website at (JAL-815) base version is 2.6.1 release of Jalview

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