Activity jalview/getdown/lib/JVL

2:32 pm

Ben Soares

JAL-3911 updated JARs for getdown

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10:54 pm

Ben Soares

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5e769e7
changed 7 files
bug/JAL-3633_read_proxy_settings_from_jalview_properties_in_getdown, improvement/JAL-3503_startup_preferences

JAL-3503 New getdown version and jar files

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6:51 pm

Ben Soares

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1e096be
changed 12 files
bug/JAL-3523_cwd_not_preserved

JAL-3523 Advanced the getdown version number

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12:55 pm

Ben Soares

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7f6ee29
changed 12 files
improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text

JAL-3790 New getdown version and jar files

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5:35 pm

Ben Soares

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Re: CR-JAL-244
replied to Jim Procter

Agreed. I seem to remember (this was a while ago now) that I found isAMacAndNotJS() and thought it might be an important distinction. Sounds like it's just redundant? Can tidy this another time then.

5:31 pm

Agree this is just touching on a much bigger task. However... The reason I /needed/ to do this rather than just /wanted/ to do this is that several of the classes I've been working on (e.g. jalview...

Agree this is just touching on a much bigger task.
However...
The reason I /needed/ to do this rather than just /wanted/ to do this is that several of the classes I've been working on (e.g. jalview.bin.Launcher, jalview.bin.HiDPISetting, jalview.bin.MemorySetting) run very early on (especially jalview.bin.Launcher!). This means Cache.log has perhaps not yet been initialised, so a Cache.log.debug doesn't log (unless you count reams of NullPointerExceptions as logging!).

In the case of HiDPISetting and MemorySetting that also get used in Getdown, where there is no jalview.bin.Cache, they currently have to use System.out and System.err [or maybe I could stub jalview.bin.Cache too]. I'd prefer them to use Cache.log when they can so this is an attempt at starting to decouple jalview.bin.Cache from other jalview things so it can be used standalone within Getdown. The main reason for wanting to do that is to have shared code to read the preferences between Jalview and Getdown.

5:56 pm

Jim Procter

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Re: CR-JAL-244
commented on review

I think there are lots of things that could be tidied up (particularly the overloading and additional logging functions via Cache which don't really reduce code at point of use, but are certainly u...

I think there are lots of things that could be tidied up (particularly the overloading and additional logging functions via Cache which don't really reduce code at point of use, but are certainly useful in spirit), but now is most definitely not the time to optimise and beautify code.

5:53 pm

Jim Procter

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Re: CR-JAL-244
commented on review

Ben Soares as far as I can see the only thing missing after this branch is merged to develop is this logic. I just did a quick test and it appears 'Platform.isAMac()' returns false under JalviewJS,...

Ben Soares as far as I can see the only thing missing after this branch is merged to develop is this logic. I just did a quick test and it appears 'Platform.isAMac()' returns false under JalviewJS, so probably not a dealbreaker. Do you agree ?

5:20 pm

Jim Procter

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CR-JAL-244
started review

JAL-3608 cherry pick of 92cb745e7

2:57 pm

Ben Soares

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1a4dd17
changed 14 files
JAL-3416_different_look_and_feel_on_linux, arnaud/develop and 40 more CR-JAL-244

JAL-3609 JAL-3775 Updated getdown with re-factored HiDPISetting and ScreenInfo. No real functionality change.

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6:10 pm

Ben Soares

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a00010a
changed 12 files
JAL-3416_different_look_and_feel_on_linux, arnaud/develop and 40 more

JAL-3775 Re-compiled Getdown jars

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4:17 pm

Ben Soares

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846d97a
changed 7 files
master, bug/JAL-3700_JAL-3748_reconstructCDSafterProteinMSA_for2_11_1_2 and 17 more

JAL-3718 Fixed getdown auto-update. This commit Getdown jars and version files.

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4:09 pm

Ben Soares

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2088084
changed 11 files

JAL-3718 fixed getdown auto-update for future updates. Getdown Jars and version files.

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11:23 pm

Ben Soares

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9c70103
changed 7 files
JAL-3416_different_look_and_feel_on_linux, arnaud/develop and 46 more

JAL-3718 force re-initialise of getdown.txt file when new getdown.txt downloaded from appbase. getdown jar and version files

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12:38 am

Ben Soares

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0240a9e
changed 20 files
master, bug/JAL-3700_JAL-3748_reconstructCDSafterProteinMSA_for2_11_1_2 and 18 more

JAL-3718 Added digestonly key to getdown.txt to copy file to alt or release when building, and to be included in the getdown digest. This key is completely ignored by the getdown-launcher. Looks in j8/j11digestonly.