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JAL-3477 Newer jalview.bin.MemorySetting jalview.bin.GetMemory source files for getdown

JAL-3477 getdown jars. This commit can be left out if it conflicts.

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JAL-3477 New jalview.bin.MemorySetting jalview.bin.GetMemory source files for getdown

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    ./src/getdown/core/src/main/java/jalview/bin/GetMemory.java
JAL-3394 catch a null pointer exception, when URI not parsed but not malformed ???

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JAL-3394 Fixed jalviews?:// scheme for macOS startup

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JAL-3394 Added a 'jalview://' and 'jalviews://' parser into getdown, uses fragment for cli args

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JAL-3449 correctly catch absence of install4j in getdown - probably for developers only

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JAL-3449 don't assume install4j jar in classpath of getdown

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JAL-3449 Added more versions to getdown splashscreen and fixed Jalview's Java Console installer version reporting

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JAL-3449 install4j version, install4j template version, getdown version now all being reported in Javliew console

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JAL-3477 A bit of refactoring for the better

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JAL-3210 cache getdown config, remove jvmmem options for better defaults

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JAL-3210 removing overly complicated logging. Settling for System.out.println and System.err.println for MemorySetting output

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JAL-3477 New jvmmemmax config option in getdown and getdown config. Set to 32G cap.

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JAL-3353 Change to build.gradle to use the file:// enabled getdown-launcher-local.jar for LOCAL and ARCHIVELOCAL builds only. Otherwise the getdown-launcher.jar (with no local file enabled) will be used

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    ./lib/getdown-launcher-local.jar
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JAL-3348 jvmmempc in jvl file now works in linux

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JAL-3348 jvmmempc multiple values shouldn't be merged

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JAL-3348 jvmmempc allowed in jvl file

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JAL-3349 Remove processed args from list to send to jalview

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JAL-3349 Added a prefix for cli args to getdown that get turned into JVM args for Jalview. Also a -jvmmempc lookup

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JAL-3348 prepping getdown to pass JVM command line args

JAL-3322 getdown jars with network timeouts applied

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JAL-3332 Sensible default timeout values for network connections (8s connect_timeout, 15s read_timeout)

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JAL-3322 Progress bar status tweaks

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JAL-3322 getdown Application class fix

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JAL-3322 corrected fix to convertBuildingMD task fail. removed debugging warnings from getdown config backups

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JAL-3322 linksCheck task output.

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JAL-3322 Removed debug logging. Enabled backup install/getdown.txt config. Added a dev doc diagram.

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JAL-3322 Once background displayed, allow asynchronous progress setting

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JAL-3322 Splashcreen now appears instantly with new setting ui.progress_sync = true. Some other minor improvements

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