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JAL-3746 release notes and what’s new for 2.11.2 - in progress

JAL-3779 Added to documentation

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    ./html/features/annotationsFormat.html
JAL-3842 fix automatic what's new link for custom version builds

JAL-3842 2.11.1.5 what’s new, release notes, and version bump Conflicts: RELEASE

JAL-3816 bump version number and cut release notes

Conflicts:

RELEASE

doc/building.html

JAL-3766 cut new patch release Conflicts: RELEASE

JAL-3758 2.11.1.2 patch release notes and version bump Conflicts: RELEASE

JAL-3741 http to https (and jar to jvp for exampleFile defaults!) Conflicts: src/jalview/bin/Jalview.java src/jalview/gui/Desktop.java

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    ./html/logging.html
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JAL-3477 added help documentation for executable jar command line arguments -jvmmempc and -jvmmemmax

JAL-3675 version update and documentation for JAL-3493 JAL-3680 JAL-3638 Conflicts: RELEASE

JAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in cursor mode. help/help/html/keys.html

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JAL-3842 fix automatic what's new link for custom version builds

JAL-3842 JAL-3746 (need to cherry pick to develop) - automatically generate link to latest release notes in what's new

JAL-3842 2.11.1.5 what’s new, release notes, and version bump

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JAL-3816 release date updated to 9th March

JAL-3816 release date set for 8th March and updated what's new

JAL-3816 new known defects JAL-3705 and JAL-3806

Revert "JAL-3816 release notes for JAL-3806"

This reverts commit ead40d75a04715c80c61e34e277bb995cb2bef90.

JAL-3816 release notes for JAL-3806

JAL-3816 JAL-3814 JAL-3813 JAL-3812 JAL-3811 JAL-3818 release notes and date for 2.11.1.4 release

JAL-3816 bump version number and cut release notes

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Agreed. I seem to remember (this was a while ago now) that I found isAMacAndNotJS() and thought it might be an important distinction. Sounds like it's just redundant? Can tidy this another time then.

Agreed. I seem to remember (this was a while ago now) that I found isAMacAndNotJS() and thought it might be an important distinction. Sounds like it's just redundant? Can tidy this another time then.

Agree this is just touching on a much bigger task. However... The reason I /needed/ to do this rather than just /wanted/ to do this is that several of the classes I've been working on (e.g. jalview...

Agree this is just touching on a much bigger task.
However...
The reason I /needed/ to do this rather than just /wanted/ to do this is that several of the classes I've been working on (e.g. jalview.bin.Launcher, jalview.bin.HiDPISetting, jalview.bin.MemorySetting) run very early on (especially jalview.bin.Launcher!). This means Cache.log has perhaps not yet been initialised, so a Cache.log.debug doesn't log (unless you count reams of NullPointerExceptions as logging!).

In the case of HiDPISetting and MemorySetting that also get used in Getdown, where there is no jalview.bin.Cache, they currently have to use System.out and System.err [or maybe I could stub jalview.bin.Cache too]. I'd prefer them to use Cache.log when they can so this is an attempt at starting to decouple jalview.bin.Cache from other jalview things so it can be used standalone within Getdown. The main reason for wanting to do that is to have shared code to read the preferences between Jalview and Getdown.

I think there are lots of things that could be tidied up (particularly the overloading and additional logging functions via Cache which don't really reduce code at point of use, but are certainly u...

I think there are lots of things that could be tidied up (particularly the overloading and additional logging functions via Cache which don't really reduce code at point of use, but are certainly useful in spirit), but now is most definitely not the time to optimise and beautify code.

Ben Soares as far as I can see the only thing missing after this branch is merged to develop is this logic. I just did a quick test and it appears 'Platform.isAMac()' returns false under JalviewJS,...

Ben Soares as far as I can see the only thing missing after this branch is merged to develop is this logic. I just did a quick test and it appears 'Platform.isAMac()' returns false under JalviewJS, so probably not a dealbreaker. Do you agree ?

JAL-3608 cherry pick of 92cb745e7
JAL-3608 cherry pick of 92cb745e7
JAL-3766 what’s new and release notes for 2.11.1.3

JAL-3766 release notes for JAL-3759

JAL-3766 release notes for JAL-3611 JAL-3765