colourSchemes

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JAL-3474 removed all .cvsignore files stored in the repo

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JAL-3111 added Colour By ID and an overview of Jalview’s alignment colouring capabilities

JAL-3224 JAL-3225 Fixed help image mangling, moved help to help/help and added this in to eclipse classpath generation

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    ./annotationColourSetting.gif
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    ./annotationColouring.html
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    ./annotationColours.gif
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