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JAL-3503 2.11.2.0 release notes and docs

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JAL-3741 http to https (and jar to jvp for exampleFile defaults!) Conflicts: src/jalview/bin/Jalview.java src/jalview/gui/Desktop.java

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JAL-3741 http to https (and jar to jvp for exampleFile defaults!)

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JAL-3477 Improved command line arguments description in memory.html

JAL-3477 Improved command line arguments description in memory.html

JAL-3477 added help documentation for executable jar command line arguments -jvmmempc and -jvmmemmax

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JAL-3477 added help documentation for executable jar command line arguments -jvmmempc and -jvmmemmax

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JAL-3477 jalview.jvmmemmax / jvmmemmax maximum value documentation

JAL-3348 revised bsoares memory settings documentation and updated docs for launching jalview from command line

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you don't need to check ext!=null if j==-1 !

you don't need to check ext!=null if j==-1 !

not convinced the label is necessary here

not convinced the label is necessary here

JAL-3348 prepping getdown to pass JVM command line args
JAL-3348 prepping getdown to pass JVM command line args
JAL-3348 memory.html documentation finished for 2.11.0

JAL-3348 start of new memory setting text

JAL-3111 JAL-3348 removed pre 2.11 instructions on setting Jalview’s memory settings. Needs information about configuring proportion of memory allocated.

JAL-3224 JAL-3225 Fixed help image mangling, moved help to help/help and added this in to eclipse classpath generation

  1. … 397 more files in changeset.