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JAL-3210 Barebones gradle/buildship/eclipse. See README

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JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11 to Jmol-14.6.4_2016.10.26

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JAL-2089 patch broken merge to master for Release 2.10.0b1

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JAL-1925 update source version in license

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JAL-1894 update year/version in copyright

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JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

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JAL-1807 merge from JAL-1759jmolUpdate

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JAL-1759 updated Jmol version in nbproject, install anywhere, THIRDPARTYLIBS, (but not yet appletParameters.html)

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JAL-1683 replace year/version strings with tokens in source

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JAL-1620 version bump and release notes

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JAL-848 reinstate netbeans files from Phylip patch branch

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Integration of David Corsars Phylip File support

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JAL-1517 update copyright to version 2.8.2

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JAL-1503 update version in GPL header

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JAL-1432 updated copyright notices

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JAL-674 - update applet build dependency on VARNA

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Jalview 2.8 Source Header

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(JAL-893) update to VARNAv3.9-dev version

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Merge branch 'JAL-980_jmol_patch' into develop

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(JAL-980) patch netbeans and installAnywhere builds

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(JAL-976) upgrade to jabaws-2.0 min-client library

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update author list in license for (JAL-826)

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apply version 2.7 copyright

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added notes on third party library licencing and updated netbeans builder library deps

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basic Netbeans project files and enriched build documentation: fixes JAL-848

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    ./project.properties
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