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JAL-3829 alternative UX: need to select 3d-beacons from dropdown if db-refs need to be fetched

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JAL-3829 do better at detecting structure type, prompt to retrieve Uniprot ids for proteins without canonical Ids and show provider in the Structure Chooser’s cache view

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JAL-3774 combined changes from bug/JAL-3774_splitFrameFinder: i) fixed focus Finder from split frame. ii) missing i18n added, overlong translation shortened. iii) better translation.

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JAL-3739 (combined) commits from feature/JAL-3739_useFormFieldText

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JAL-3829 update for v1.0 3d-beacons api spec

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    ./fts/tdbeacons_data_columns.txt
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JAL-3829 proof in principle 3d-beacons sequence fetcher - still some TODOs !

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    ./fts/tdbeacons_data_columns.txt
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JAL-3929 proof in principle 3d-beacons sequence fetcher - still some TODOs !

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    ./fts/tdbeacons_data_columns.txt
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JAL-3829 fixed up the 3d-beacons data columns definitions, tests and client.

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JAL-3929 fixed up the 3d-beacons data columns definitions, tests and client.

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JAL-3929 tidying up PDBFTSRestClient test responses - still one failing external test which expects to raise a server exception

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JAL-3829 tidying up PDBFTSRestClient test responses - still one failing external test which expects to raise a server exception

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remove debugging printlns

remove debugging printlns

aim is normally to avoid creating query-specific data containers on the core query response class

aim is normally to avoid creating query-specific data containers on the core query response class

? not sure this is correct

? not sure this is correct

Needs additionally: model_category created sequence_identity uniprot_start uniprot_end resolution coverage qmean_version ? model_version

Needs additionally:
model_category
created
sequence_identity
uniprot_start
uniprot_end
resolution
coverage
qmean_version ?
model_version

Evaluate 3D-Beacons dev path based on Arnaud's ERASMUS+ project code
Evaluate 3D-Beacons dev path based on Arnaud's ERASMUS+ project code
JAL-3948 - temporarily add the ojdk8 calendardata file (GPL licensed)

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    ./sun/util/resources/CalendarData.properties
JAL-3832 Gui working, with 3DBeacons parameters

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JAL-3832 Gui working, with 3DBeacons parameters

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JAL-3829 more testing wit tdbeacons data columns and FTSclient

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JAL-3829 attempt to fix my changes to follow the Jira issue

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Created 3Dbeacons data_columns.txt Test passed for data columns

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    ./fts/tdbeacons_data_columns.txt
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JAL-3503 Added a Startup tab in Preferences, with gui for JVMMEMMAX and JVMMEMPC settings. Allowed jalview.bin.Launcher and getdown to read/use these memory settings at launch. Added channel.props to getdown appdir, used to determing correct .jalview_properties file. Refactored MemorySetting a bit, with more helper methods for the Preferences tab.

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Merge branch 'feature/JAL-3692enaEndpoint' into patch/for2.11.2/JAL-3821_ena_rna_moltype

JAL-3594 Images for splash screen

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    ./default_images/UoD_banner-28.png
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    ./default_images/UoD_banner-30.png
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    ./default_images/UoD_banner-32.png
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    ./default_images/barton_group-28.png
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    ./default_images/barton_group-30.png
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    ./default_images/barton_group-32.png
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    ./default_images/barton_group-62.png
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JAL-3594 added BG logo. Changed some named Jalviews to app_name property. Added test-release and default channels.

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    ./default_images/barton_group-62.png
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JAL-3594 Default values for channel properties defined in code as fallback

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    ./default_images/UoD_banner.png
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    ./default_images/jalview_banner.png
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    ./default_images/jalview_logo-128.png
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    ./default_images/jalview_logo-16.png
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    ./default_images/jalview_logo-256.png
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    ./default_images/jalview_logo-32.png
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    ./default_images/jalview_logo-38.png
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    ./default_images/jalview_logo-48.png
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    ./default_images/jalview_logo-512.png
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    ./default_images/jalview_logo-64.png
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    ./default_images/rotatable_jalview_logo-38.png
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JAL-3739 catch parameter errors and report to the user

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