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JAL-3416 make flat default laf for linux

JAL-3416 updated FlatLaf to 1.6 and added some tabbed pane properties

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Merge branch 'develop' into JAL-3416_different_look_and_feel_on_linux

JAL-3691 automatic insertion of Locale.ROOT to toUpperCase() and toLowerCase() and added import java.util.Locale appropriately

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JAL-3741 http to https (and jar to jvp for exampleFile defaults!) Conflicts: src/jalview/bin/Jalview.java src/jalview/gui/Desktop.java

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JAL-2422 More helpful highlighting/user guidance of missing structure viewer path

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JAL-3851 fix caching and tidy up old methods

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JAL-3851 API handling of rest calls

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JAL-3851 convenience methods for logging exceptions

JAL-3851 throwaway code

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JAL-3851 start a listener with -testlistener and suggest a port with -testlistener_port. wget -S -O...
JAL-3851 start a listener with -testlistener and suggest a port with -testlistener_port. wget -S -O...
JAL-3851 start a listener with -testlistener and suggest a port with -testlistener_port. wget -S -O - http://localhost:20212/jalview/TEST/viewgene/ENSG00000139618

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JAL-3848 add compbio and jalview to direct connection list for J2S

WIP
WIP
JAL-3833 Allow setHiDPI and setHiDPIScale to work more usefully in real life

JAL-3833 cap the scaling used by HiDPISetting for incorrect DPI values or incorrect height/width values

JAL-3833 cap the scaling used by HiDPISetting for incorrect DPI values or incorrect height/width values

JAL-3633 refactored/simplified LaunchUtils code

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JAL-3503 Changed decimal display of memory in Prefences

JAL-3503 Added a Startup tab in Preferences, with gui for JVMMEMMAX and JVMMEMPC settings. Allowed jalview.bin.Launcher and getdown to read/use these memory settings at launch. Added channel.props to getdown appdir, used to determing correct .jalview_properties file. Refactored MemorySetting a bit, with more helper methods for the Preferences tab.

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JAL-3594 Allow a channel to use a different preferences file than .jalview_properties, with initial read from .jalview_properties

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JAL-3813 NOIDENTIFIERSSERVICE preference disables jalview pinging www.jalview.org/services/identifiers to get a list of URL link templates for viewing database crossreferences

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JAL-3812 new argument ‘-nohtmltemplates’ and user preference ‘NOHTMLTEMPLATES’ to disable download of templates from GitHub repository

JAL-3811 document SHOW_JWS2_SERVICES user preference and provide new menu option for ‘one off’ JABAWS discovery if preference is disabled.

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JAL-3814 NONEWS property

JAL-3419 improved look of tabs

JAL-3416 Added FlatLightLaf, use with -Dlaf=flat property

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JAL-3280 Fixed the version checking URL formulation (getdown build_properties) for jalviewjs, can also use it for jalviewjs in future