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JAL-3253 removing old .cvsIgnore not in develop

  1. … 8 more files in changeset.
JAL-3474 removed all .cvsignore files stored in the repo

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This commit was manufactured by cvs2svn to create branch 'VamJalview'.

Cherrypick from master 2006-09-07 11:39:36 UTC jimp 'added copy consensus sequence to consensus annotation popup menu':

src/jalview/appletgui/Tooltip.java

src/jalview/datamodel/.cvsignore

src/jalview/datamodel/AlignmentView.java

src/jalview/datamodel/CigarArray.java

src/jalview/datamodel/CigarBase.java

src/jalview/datamodel/CigarCigar.java

src/jalview/datamodel/CigarSimple.java

src/jalview/datamodel/ColumnSelection.java

src/jalview/datamodel/DBRefSource.java

src/jalview/datamodel/SeqCigar.java

src/jalview/datamodel/UniprotProteinName.java

src/jalview/gui/AnnotationExporter.java

src/jalview/gui/DasSourceBrowser.java

src/jalview/gui/Jalview2XML_V1.java

src/jalview/io/AnnotationFile.java

src/jalview/io/DBRefFetcher.java

src/jalview/io/DasSequenceFeatureFetcher.java

src/jalview/io/FeaturesFile.java

src/jalview/io/JnetAnnotationMaker.java

src/jalview/io/StockholmFile.java

src/jalview/jbgui/GDasSourceBrowser.java

src/jalview/schemabinding/version2/Alignment.java

src/jalview/schemabinding/version2/AlignmentDescriptor.java

src/jalview/schemabinding/version2/Annotation.java

src/jalview/schemabinding/version2/AnnotationColours.java

src/jalview/schemabinding/version2/AnnotationColoursDescriptor.java

src/jalview/schemabinding/version2/AnnotationDescriptor.java

src/jalview/schemabinding/version2/AnnotationElement.java

src/jalview/schemabinding/version2/AnnotationElementDescriptor.java

src/jalview/schemabinding/version2/Colour.java

src/jalview/schemabinding/version2/ColourDescriptor.java

src/jalview/schemabinding/version2/DBRef.java

src/jalview/schemabinding/version2/DBRefDescriptor.java

src/jalview/schemabinding/version2/Feature.java

src/jalview/schemabinding/version2/FeatureDescriptor.java

src/jalview/schemabinding/version2/FeatureSettings.java

src/jalview/schemabinding/version2/FeatureSettingsDescriptor.java

src/jalview/schemabinding/version2/Features.java

src/jalview/schemabinding/version2/FeaturesDescriptor.java

src/jalview/schemabinding/version2/HiddenColumns.java

src/jalview/schemabinding/version2/HiddenColumnsDescriptor.java

src/jalview/schemabinding/version2/JGroup.java

src/jalview/schemabinding/version2/JGroupDescriptor.java

src/jalview/schemabinding/version2/JSeq.java

src/jalview/schemabinding/version2/JSeqDescriptor.java

src/jalview/schemabinding/version2/JalviewModel.java

src/jalview/schemabinding/version2/JalviewModelDescriptor.java

src/jalview/schemabinding/version2/JalviewModelSequence.java

src/jalview/schemabinding/version2/JalviewModelSequenceDescriptor.java

src/jalview/schemabinding/version2/JalviewUserColours.java

src/jalview/schemabinding/version2/JalviewUserColoursDescriptor.java

src/jalview/schemabinding/version2/OtherData.java

src/jalview/schemabinding/version2/OtherDataDescriptor.java

src/jalview/schemabinding/version2/Pdbentry.java

src/jalview/schemabinding/version2/PdbentryDescriptor.java

src/jalview/schemabinding/version2/PdbentryItem.java

src/jalview/schemabinding/version2/PdbentryItemDescriptor.java

src/jalview/schemabinding/version2/Pdbids.java

src/jalview/schemabinding/version2/PdbidsDescriptor.java

src/jalview/schemabinding/version2/Property.java

src/jalview/schemabinding/version2/PropertyDescriptor.java

src/jalview/schemabinding/version2/Sequence.java

src/jalview/schemabinding/version2/SequenceDescriptor.java

src/jalview/schemabinding/version2/SequenceSet.java

src/jalview/schemabinding/version2/SequenceSetDescriptor.java

src/jalview/schemabinding/version2/SequenceType.java

src/jalview/schemabinding/version2/SequenceTypeDescriptor.java

src/jalview/schemabinding/version2/Setting.java

src/jalview/schemabinding/version2/SettingDescriptor.java

src/jalview/schemabinding/version2/ThresholdLine.java

src/jalview/schemabinding/version2/ThresholdLineDescriptor.java

src/jalview/schemabinding/version2/Tree.java

src/jalview/schemabinding/version2/TreeDescriptor.java

src/jalview/schemabinding/version2/UserColourScheme.java

src/jalview/schemabinding/version2/UserColourSchemeDescriptor.java

src/jalview/schemabinding/version2/UserColours.java

src/jalview/schemabinding/version2/UserColoursDescriptor.java

src/jalview/schemabinding/version2/VAMSAS.java

src/jalview/schemabinding/version2/VAMSASDescriptor.java

src/jalview/schemabinding/version2/VamsasModel.java

src/jalview/schemabinding/version2/VamsasModelDescriptor.java

src/jalview/schemabinding/version2/Viewport.java

src/jalview/schemabinding/version2/ViewportDescriptor.java

src/jalview/util/ShiftList.java

src/jalview/util/TableSorter.java

src/jalview/ws/MsaWSThread.java

src/jalview/ws/WSThread.java

src/org/biojava/dasobert/das/DAS_FeatureRetrieve.java

src/org/biojava/dasobert/das/DAS_Feature_Handler.java

src/org/biojava/dasobert/das/FeatureThread.java

src/org/biojava/dasobert/das2/Das2Capability.java

src/org/biojava/dasobert/das2/Das2CapabilityImpl.java

src/org/biojava/dasobert/das2/Das2Source.java

src/org/biojava/dasobert/das2/Das2SourceImpl.java

src/org/biojava/dasobert/das2/DasSourceConverter.java

src/org/biojava/dasobert/das2/io/DAS2SourceHandler.java

src/org/biojava/dasobert/das2/io/DasSourceReader.java

src/org/biojava/dasobert/das2/io/DasSourceReaderImpl.java

src/org/biojava/dasobert/dasregistry/Das1Source.java

src/org/biojava/dasobert/dasregistry/Das2Validator.java

src/org/biojava/dasobert/dasregistry/DasCoordSysComparator.java

src/org/biojava/dasobert/dasregistry/DasCoordinateSystem.java

src/org/biojava/dasobert/dasregistry/DasSource.java

src/org/biojava/dasobert/dasregistry/DasSourceComparator.java

src/org/biojava/dasobert/eventmodel/FeatureEvent.java

src/org/biojava/dasobert/eventmodel/FeatureListener.java

src/org/biojava/dasobert/eventmodel/ObjectListener.java

src/org/biojava/dasobert/eventmodel/SequenceEvent.java

src/org/biojava/dasobert/eventmodel/SequenceListener.java

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Ignore list created

  1. … 12 more files in changeset.