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JAL-3829 open web page for 3d beacons structure by right-clicking and selecting pop up menu item

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JAL-3829 abstract essential TDB metadata from the user configurable data array displayed in the JTable

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    ./threedbeacons/TDB_FTSData.java
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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3829 throw the exception even if it has no message

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    ./threedbeacons/TDBeaconsFTSRestClient.java
JAL-3829 move mock query and responses to files

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    ./pdb/PDBFTSRestClient.java
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JAL-3829 allow multiple URL mocks and include P01308 in 3d-beacons mocks

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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3829 JalviewJS workarounds/patches

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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3829 ensure tests use mocked service - proper exception for mocked 400 response

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JAL-3829 point at production 3d-beacons url

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    ./threedbeacons/TDBeaconsFTSRestClient.java
JAL-3829 mocking for PDBFTS for related query to UniprotFTS mock.

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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3829 mocking for testing 3D-Beacons FTS endpoint

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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3855 don’t need to query Alphafold2 repository directly from PDBe FTS client since 3db client will do that

Merge branch 'feature/JAL-3855_ebi_alphafold_import' (commit '7856e91f60adc5c2d4943bad84a5a83e1412f00c') into features/r2_11_2_JAL-3929_3dbeacons

Merge branch 'feature/JAL-3855_ebi_alphafold_import' (commit '7856e91f60adc5c2d4943bad84a5a83e1412f00c') into features/r2_11_2_JAL-3929_3dbeacons

JAL-3929 3d-beacons structure chooser logic (not yet finished)

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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3829 3d-beacons structure chooser logic (not yet finished)

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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3829 proof in principle 3d-beacons sequence fetcher - still some TODOs !

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    ./threedbeacons/TDBeaconsFTSPanel.java
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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3929 proof in principle 3d-beacons sequence fetcher - still some TODOs !

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    ./threedbeacons/TDBeaconsFTSPanel.java
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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3829 fixed up the 3d-beacons data columns definitions, tests and client.

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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3929 fixed up the 3d-beacons data columns definitions, tests and client.

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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3829 removed unneeded attribute in FTS core

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    ./threedbeacons/TDBeaconsFTSRestClient.java
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JAL-3929 removed unneeded attribute in FTS core

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    ./threedbeacons/TDBeaconsFTSRestClient.java
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patch needed for 2.11.2 - JAL-3518 - catch case when no replies are available

patch needed for 2.11.2 - JAL-3518 - catch case when no replies are available

semantics for determining if a PDB file has a SIFTs mapping - could be absorbed into the PDB metadata object

semantics for determining if a PDB file has a SIFTs mapping - could be absorbed into the PDB metadata object

magic logic to recognise which structure database provider client to use - PDB or AlphaFold - ensures metadata and annotation rows are propagates

magic logic to recognise which structure database provider client to use - PDB or AlphaFold - ensures metadata and annotation rows are propagates

Reviewing the alphafold + contact matrix patch for 2.11.2
Reviewing the alphafold + contact matrix patch for 2.11.2
remove debugging printlns

remove debugging printlns

aim is normally to avoid creating query-specific data containers on the core query response class

aim is normally to avoid creating query-specific data containers on the core query response class

? not sure this is correct

? not sure this is correct

Needs additionally: model_category created sequence_identity uniprot_start uniprot_end resolution coverage qmean_version ? model_version

Needs additionally:
model_category
created
sequence_identity
uniprot_start
uniprot_end
resolution
coverage
qmean_version ?
model_version