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JAL-3829 open web page for 3d beacons structure by right-clicking and selecting pop up menu item

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    ./structurechooser/ThreeDBStructureChooserQuerySource.java
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JAL-3829 right click to view popup menu to show link - maybe better to have a link button in the table instead ?

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JAL-3829 abstract essential TDB metadata from the user configurable data array displayed in the JTable

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    ./structurechooser/ThreeDBStructureChooserQuerySource.java
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JAL-3691 automatic insertion of Locale.ROOT to toUpperCase() and toLowerCase() and added import java.util.Locale appropriately

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    ./structurechooser/PDBStructureChooserQuerySource.java
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    ./structurechooser/StructureChooserQuerySource.java
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Merge branch 'doc/JAL-3746_Release_2_11_2' into develop

JAL-3829 - callback finessing - leave DBRefFetcher to do progress updates itself

JAL-3829 prefix PDBe filters with PDBe to make clear what they search

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    ./structurechooser/PDBStructureChooserQuerySource.java
JAL-3829 alternative UX: need to select 3d-beacons from dropdown if db-refs need to be fetched

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    ./structurechooser/StructureChooserQuerySource.java
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JAL-3829 tests need to wait for dialog to be closed and background processes to finish before they can check functionality

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JAL-3829 TDBeacons fetcher needs a sequence with at least one canonical uniprot accession

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    ./structurechooser/StructureChooserQuerySource.java
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JAL-3829 do better at detecting structure type, prompt to retrieve Uniprot ids for proteins without canonical Ids and show provider in the Structure Chooser’s cache view

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    ./structurechooser/StructureChooserQuerySource.java
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    ./structurechooser/TDBResultAnalyser.java
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    ./structurechooser/ThreeDBStructureChooserQuerySource.java
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JAL-3829 belt and braces check to make sure there is a pdbe response available to join records from

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    ./structurechooser/ThreeDBStructureChooserQuerySource.java
JAL-3774 combined changes from bug/JAL-3774_splitFrameFinder: i) fixed focus Finder from split frame. ii) missing i18n added, overlong translation shortened. iii) better translation.

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JAL-3739 (combined) commits from feature/JAL-3739_useFormFieldText

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JAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick

JAL-3741 http to https (and jar to jvp for exampleFile defaults!) Conflicts: src/jalview/bin/Jalview.java src/jalview/gui/Desktop.java

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JAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in cursor mode. help/help/html/keys.html

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JAL-3855 JAL-3829 better checks on PDB or mmCIF file based on URL path (though should really determine when processing via jmolData now we have mechanism) - ChimeraX in particular cares about file endings

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    ./structurechooser/ThreeDBStructureChooserQuerySource.java
JAL-3829 JAL-3855 moved routing for retrieving structures prior to opening a Jmol view to AppJmolBinding - this could be refactored further

JAL-3829 avoid sending rubbish to PDBe search api

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    ./structurechooser/ThreeDBStructureChooserQuerySource.java
JAL-3829 some providers don’t provide model quality, some experimental methods don’t provide a resolution - try to leave these in their natural order

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    ./structurechooser/TDBResultAnalyser.java
JAL-2422 More helpful highlighting/user guidance of missing structure viewer path

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JAL-3829 select single best TDB structure and select structures from particular provider (this code is horrific !)

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    ./structurechooser/StructureChooserQuerySource.java
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    ./structurechooser/TDBResultAnalyser.java
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    ./structurechooser/ThreeDBStructureChooserQuerySource.java
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JAL-3829 provide both PDBe queries and 3D-Beacons queries in the filter combo box

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    ./structurechooser/PDBStructureChooserQuerySource.java
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    ./structurechooser/StructureChooserQuerySource.java
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    ./structurechooser/ThreeDBStructureChooserQuerySource.java
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JAL-3829 insert title for structures from PDBe

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    ./structurechooser/ThreeDBStructureChooserQuerySource.java
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JAL-3829 update for v1.0 3d-beacons api spec

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    ./structurechooser/TDBResultAnalyser.java
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JAL-3851 Added GetCrossReferencesEndpoint. Quite a bit of refactorying of Async error handling

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JAL-3851 some changes. HighlightSequenceEndpoint and SelectSequenceEndpoint

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JAL-3829 refactor and JAL-3391 JAL-2935 first stab at coverage based selection of models for a sequence

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    ./structurechooser/TDBResultAnalyser.java
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    ./structurechooser/ThreeDBStructureChooserQuerySource.java
JAL-3829 allow client-side selection of structures for a sequence by passing in discovered structures

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    ./structurechooser/PDBStructureChooserQuerySource.java
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    ./structurechooser/StructureChooserQuerySource.java
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    ./structurechooser/ThreeDBStructureChooserQuerySource.java
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