3.2.9-j11

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JAL-3789 New swingjs for Java2Script 3.2.10 with j2s.config.altfileproperty

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JAL-3789 New swingjs for Java2Script 3.2.10 with j2s.config.altfileproperty

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    ./differences.txt
    • binary
    ./net.sf.j2s.core-j11.jar
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JAL-3690 Let's enable web services (seriously this time)

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JAL-3690 Web services and interactive workers somewhat working.

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JAL-3223 - update swingjs to 3.2.9-j11

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JAL-3690 update to swingjs patch 3.2.9

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    ./differences.txt
    • binary
    ./net.sf.j2s.core-j11.jar
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JAL-3690 update j2s from hanson1 branch 0b8b02bb

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Ah it does run when a column selection is made in a split frame (and propagated to the other panel). Which seems to work! Maybe just needs a less clumsy AlignmentViewport.isColSelChanged() - this m...

Ah it does run when a column selection is made in a split frame (and propagated to the other panel). Which seems to work!
Maybe just needs a less clumsy AlignmentViewport.isColSelChanged() - this method seems to be trying to do two different things.

Suggesting renaming to PROPERTY_COLUMNS = "columns" as this is used to notify changes to column selection or visibility, not sequences

Suggesting renaming to PROPERTY_COLUMNS = "columns" as this is used to notify changes to column selection or visibility, not sequences

I think this code path rarely gets run (AlignmentViewport.notifySequence() rarely gets called). So what is it there for?

I think this code path rarely gets run (AlignmentViewport.notifySequence() rarely gets called).
So what is it there for?

Suggest renaming notifyAlignment() to notifyAlignmentChanged(), and notifySequence() to notifyColumnChange() as it it fired for changes to column (not sequence) selection or visibility.

Suggest renaming notifyAlignment() to notifyAlignmentChanged(), and notifySequence() to notifyColumnChange() as it it fired for changes to column (not sequence) selection or visibility.

Unclear what notifySequence() adds. As placed here, it is hardly ever reached.

Unclear what notifySequence() adds. As placed here, it is hardly ever reached.

Not sure how to review this (and the appletgui/js classes) without pointers to documentation and/or examples of how it is used.

Not sure how to review this (and the appletgui/js classes) without pointers to documentation and/or examples of how it is used.

Needs proper Javadoc

Needs proper Javadoc

Files added to doc folder: are this intended as working documents, or publishable documentation? Bearing in mind that that are findable on the web and a user might reasonably expect them to provide...

Files added to doc folder: are this intended as working documents, or publishable documentation? Bearing in mind that that are findable on the web and a user might reasonably expect them to provide documentation.
e.g. http://source.jalview.org/gitweb/?p=jalview.git;a=blob;f=doc/JalviewJS-startupParams.md;h=9ff33529b2dbc2da34d2a573ccf5d042194fbb0d;hb=refs/heads/Jalview-JS/develop

Due to the number of changes this is likely to be a 'best efforts' review.

Due to the number of changes this is likely to be a 'best efforts' review.

Commits to JS-develop from 2nd to 25th June 2020
Commits to JS-develop from 2nd to 25th June 2020
JAL-3622 update with swingJS from hansonr1

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JAL-3657 SwingJS HashMap.putEntries() coding mistake.

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JAL-3653 SwingJS support for indeterminate JProgressBar

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minor changes

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SwingJS upgrade fixes AlignmentPanel keyPressed not called

- ContentPane was getting the message, not JInternalFrame

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JAL-3446 proposed dropdown fix

- 100 ms delay for opening

- proper toggle operation for button

- all actions on mouseup

- tooltips open and close appropriately

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Minor updates

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    ./differences.txt
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JAL-3446 minor SwingJS-site.zip fixes; Assets.

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    ./differences.txt
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JAL-3446 JavaScript interface

- testing with two apps on a page

- now requires Jalview1.getApp().xxxx, not just Jalview1.app, because a

call is needed to ensure that ThreadGroup is set correctly.

- still working on this...

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SwingJS upgrade for JSUtil and JSUtilI

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JAL-3664 support for user.home, user.dir, user

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AsyncSwingWorker setpaused adjustment

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