test

Clone Tools
  • last updated a few seconds ago
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
JAL-2349 TODO for tests

    • -0
    • +13
    ./jalview/datamodel/AlignmentTest.java
JAL-2349 JAL-3855 formatting

    • -10
    • +10
    ./jalview/datamodel/AlignmentTest.java
  1. … 2 more files in changeset.
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL-3855' into develop

  1. … 10 more files in changeset.
JAL-4026 increase timeouts for command line ops

    • -4
    • +4
    ./jalview/bin/CommandLineOperations.java
JAL-4026 always wait 50ms before checking if the calculation worker is still running so it has time to start.

JAL-4026 always wait 50ms before checking if the calculation worker is still running so it has time to start.

JAL-4026 more pointless sleeps

    • -0
    • +7
    ./jalview/gui/SeqPanelTest_isolate.java
  1. … 2 more files in changeset.
JAL-4026 isolate the failing test in its own class

    • -0
    • +202
    ./jalview/gui/SeqPanelTest_isolate.java
JAL-4026 make jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequence sequential

JAL-4020 updated tests

    • -1
    • +6
    ./jalview/ext/pymol/PymolManagerTest.java
JAL-1953 fix test and expected for canonical name for PFAM!

JAL-1953 update canonical db test for PFAM canonical name - also note could do the same for JAL-4022

JAL-4021 todo & fix FileFormat tests

  1. … 2 more files in changeset.
JAL-1953 2.11.2 with Archeopteryx! Minimal patches and Merge branch 'kjvdh/features/PhylogenyViewer' into merge/2_11_2/PhylogenyViewer also restored last kjvdh build of forester to j8 and j11lib directories Conflicts: .classpath j8lib/forester.jar resources/lang/Messages.properties src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java src/jalview/fts/core/GFTSPanel.java src/jalview/fts/service/pdb/PDBFTSPanel.java src/jalview/gui/AlignFrame.java src/jalview/gui/DasSourceBrowser.java src/jalview/gui/Desktop.java src/jalview/gui/PopupMenu.java src/jalview/gui/SplashScreen.java src/jalview/gui/StructureViewerBase.java src/jalview/io/BioJsHTMLOutput.java src/jalview/io/FileLoader.java src/jalview/io/HtmlSvgOutput.java src/jalview/project/Jalview2XML.java src/jalview/schemabinding/version2/JalviewModelSequence.java src/jalview/util/DBRefUtils.java src/jalview/viewmodel/AlignmentViewport.java src/jalview/ws/DBRefFetcher.java src/jalview/ws/DasSequenceFeatureFetcher.java src/jalview/ws/jws2/Jws2Discoverer.java utils/jalviewjs/buildxml/build.xml

  1. … 38 more files in changeset.
Merge branch 'kjvdh/features/PhylogenyViewer_tabbedsupport' into merge/2_11_2/kjvdh/features/PhylogenyViewer_tabbedsupport Update from Release 2.11.2 develop branch JAL-1953 Conflicts: .classpath .project resources/lang/Messages.properties src/jalview/bin/Jalview.java src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java src/jalview/fts/core/GFTSPanel.java src/jalview/fts/service/pdb/PDBFTSPanel.java src/jalview/gui/AlignFrame.java src/jalview/gui/CalculationChooser.java src/jalview/gui/DasSourceBrowser.java src/jalview/gui/Desktop.java src/jalview/gui/PopupMenu.java src/jalview/gui/SplashScreen.java src/jalview/gui/StructureViewerBase.java src/jalview/gui/TreePanel.java src/jalview/gui/WebserviceInfo.java src/jalview/io/BioJsHTMLOutput.java src/jalview/io/FileLoader.java src/jalview/io/HtmlSvgOutput.java src/jalview/io/NewickFile.java src/jalview/math/Matrix.java src/jalview/math/MatrixI.java src/jalview/util/MappingUtils.java src/jalview/ws/DBRefFetcher.java src/jalview/ws/DasSequenceFeatureFetcher.java src/jalview/ws/jws2/Jws2Discoverer.java utils/eclipse/org.eclipse.jdt.core.jalview.prefs utils/eclipse/org.eclipse.jdt.ui.prefs

  1. … 37 more files in changeset.
JAL-3365 the correct Pfam ID

  1. … 2 more files in changeset.
JAL-3365 per-sequence secondary structure symbol ‘X’ is not properly exported and reimported

  1. … 2 more files in changeset.
JAL-3365 expand range of allowed DSSP secondary structure symbols in Stockholm files

    • -0
    • +12
    ./jalview/io/StockholmFileTest.java
  1. … 2 more files in changeset.
JAL-3981 patch tests and remove errant imports

    • -13
    • +22
    ./jalview/io/SequenceAnnotationReportTest.java
  1. … 1 more file in changeset.
JAL-3990 gradle spotlessApply

  1. … 2 more files in changeset.
JAL-3085 update tests and mock responses, new P0dtd1 testcase

    • -343
    • +362
    ./jalview/fts/service/pdb/PDBFTSRestClientTest.java
    • -0
    • +1
    ./jalview/fts/threedbeacons/p01308_tdb_fts_query_resp.txt
    • -0
    • +2
    ./jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt1.txt
    • -0
    • +2506
    ./jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt1_resp.txt
    • -0
    • +2
    ./jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt2.txt
    • -0
    • +2520
    ./jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt2_resp.txt
    • -0
    • +1
    ./jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt3.txt
    • -0
    • +2517
    ./jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt3_resp.txt
    • -0
    • +1
    ./jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt4.txt
    • -0
    • +793
    ./jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt4_resp.txt
    • -0
    • +1
    ./jalview/fts/threedbeacons/p0dtd1_tdb_fts_query_resp.txt
    • -0
    • +1
    ./jalview/fts/threedbeacons/p38398_tdb_fts_query_resp.txt
JAL-3976 fix mock PDBFTS query & responses

JAL-3976 update tests

Merge branch 'master' into releases/Release_2_11_2_Branch

    • -224
    • +0
    ./jalview/gui/SplitFrameTest.java
  1. … 6 more files in changeset.
JAL-3746 apply copyright to tests

    • -0
    • +20
    ./jalview/analysis/GeneticCodesTest.java
    • -0
    • +20
    ./jalview/bin/HiDPISettingTest1.java
    • -0
    • +20
    ./jalview/datamodel/SequenceGroupTest.java
    • -0
    • +20
    ./jalview/datamodel/features/FeatureStoreTest.java
    • -0
    • +20
    ./jalview/ext/android/SparseDoubleArrayTest.java
  1. … 59 more files in changeset.
JAL-3438 spotless for 2.11.2.0

    • -18
    • +15
    ./jalview/analysis/AAFrequencyTest.java
    • -21
    • +21
    ./jalview/analysis/AlignmentGenerator.java
    • -172
    • +212
    ./jalview/analysis/AlignmentUtilsTests.java
    • -16
    • +24
    ./jalview/analysis/CodingUtilsTest.java
    • -13
    • +11
    ./jalview/analysis/ConservationTest.java
    • -35
    • +48
    ./jalview/analysis/CrossRefTest.java
    • -9
    • +14
    ./jalview/analysis/GroupingTest.java
    • -7
    • +5
    ./jalview/analysis/SeqsetUtilsTest.java
  1. … 647 more files in changeset.
JAL-3108 updated Ensembl client and model species names

    • -1
    • +2
    ./jalview/ext/ensembl/EnsemblGeneTest.java
  1. … 3 more files in changeset.
JAL-3438 - all src and test run through spotless..

    • -18
    • +15
    ./jalview/analysis/AAFrequencyTest.java
    • -21
    • +21
    ./jalview/analysis/AlignmentGenerator.java
    • -172
    • +212
    ./jalview/analysis/AlignmentUtilsTests.java
    • -16
    • +24
    ./jalview/analysis/CodingUtilsTest.java
    • -13
    • +11
    ./jalview/analysis/ConservationTest.java
    • -35
    • +48
    ./jalview/analysis/CrossRefTest.java
    • -9
    • +14
    ./jalview/analysis/GroupingTest.java
    • -7
    • +5
    ./jalview/analysis/SeqsetUtilsTest.java
  1. … 654 more files in changeset.
JAL-3551 patch superpose test for additional undo dis/enable commands

    • -3
    • +3
    ./jalview/ext/pymol/PymolCommandsTest.java
Merge branch 'develop' into features/r2_11_2_alphafold/JAL-2349_JAL-3855 combined new logic for 2.11.2 3d-beacons with original hack to resolve PAE and CIF Conflicts: src/jalview/ws/dbsources/EBIAlfaFold.java

  1. … 5 more files in changeset.