jalview/test/jalview

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Tuesday 05 Apr
6:14 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3990 gradle spotlessApply

Options
    • -6
    • +4
    ./service/pdb/PDBFTSRestClientTest.java
  2. … 3 more files in changeset.
Thursday 31 Mar
3:17 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3085 update tests and mock responses, new P0dtd1 testcase

Options
    • -343
    • +362
    ./service/pdb/PDBFTSRestClientTest.java
    • -5
    • +13
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
    • -1
    • +1
    ./threedbeacons/p01308_pdbfts_query.txt
    • -0
    • +1
    ./threedbeacons/p01308_tdb_fts_query_resp.txt
    • -1
    • +0
    ./threedbeacons/p01308_tdb_resp.txt
    • -0
    • +2
    ./threedbeacons/p0dtd1_pdbfts_fts_query_pt1.txt
    • -0
    • +2506
    ./threedbeacons/p0dtd1_pdbfts_fts_query_pt1_resp.txt
    • -0
    • +2
    ./threedbeacons/p0dtd1_pdbfts_fts_query_pt2.txt
    • -0
    • +2520
    ./threedbeacons/p0dtd1_pdbfts_fts_query_pt2_resp.txt
    • -0
    • +1
    ./threedbeacons/p0dtd1_pdbfts_fts_query_pt3.txt
    • -0
    • +2517
    ./threedbeacons/p0dtd1_pdbfts_fts_query_pt3_resp.txt
    • -0
    • +1
    ./threedbeacons/p0dtd1_pdbfts_fts_query_pt4.txt
    • -0
    • +793
    ./threedbeacons/p0dtd1_pdbfts_fts_query_pt4_resp.txt
    • -0
    • +1
    ./threedbeacons/p0dtd1_tdb_fts_query_resp.txt
    • -0
    • +1
    ./threedbeacons/p38398_tdb_fts_query_resp.txt
  16. … 1 more file in changeset.
Wednesday 30 Mar
5:32 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3976 fix mock PDBFTS query & responses

Options
    • -1
    • +1
    ./threedbeacons/p01308_pdbfts_query.txt
    • -1
    • +2377
    ./threedbeacons/p01308_pdbfts_resp.txt
Wednesday 23 Mar
12:22 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3976 update tests

Options
    • -2
    • +4
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
    • -2377
    • +1
    ./threedbeacons/p01308_pdbfts_resp.txt
    • -1
    • +1
    ./threedbeacons/p01308_tdb_resp.txt
Tuesday 08 Mar
9:58 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3746 apply copyright to tests

Options
    • -0
    • +20
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
    • -0
    • +20
    ./threedbeacons/TDBeaconsPanelTest.java
  3. … 72 more files in changeset.
9:30 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3438 spotless for 2.11.2.0

Options
    • -8
    • +8
    ./core/FTSRestClientTest.java
    • -10
    • +12
    ./service/pdb/PDBFTSPanelTest.java
    • -353
    • +365
    ./service/pdb/PDBFTSRestClientTest.java
    • -10
    • +14
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
    • -14
    • +14
    ./threedbeacons/TDBeaconsPanelTest.java
  6. … 657 more files in changeset.
Wednesday 02 Mar
6:25 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3438 - all src and test run through spotless..

Options
    • -8
    • +8
    ./core/FTSRestClientTest.java
    • -10
    • +12
    ./service/pdb/PDBFTSPanelTest.java
    • -353
    • +365
    ./service/pdb/PDBFTSRestClientTest.java
    • -10
    • +14
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
    • -14
    • +14
    ./threedbeacons/TDBeaconsPanelTest.java
  6. … 664 more files in changeset.
Friday 05 Nov 2021
6:13 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 remove duplicate IDs in 3DBeacons generated PDBFTS query and update mocks

Options
    • -329
    • +333
    ./service/pdb/PDBFTSRestClientTest.java
    • -2
    • +1
    ./threedbeacons/p01308_pdbfts_query.txt
    • -1016
    • +1012
    ./threedbeacons/p01308_pdbfts_resp.txt
  4. … 1 more file in changeset.
4:38 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3919 use model format field to ensure we get the file extension correct when creating temp files for structure viewers

Options
    • -4
    • +4
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
    • -1
    • +1
    ./threedbeacons/p01308_tdb_resp.txt
  3. … 3 more files in changeset.
Monday 20 Sep 2021
2:56 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 updated response for P01308

Options
    • -1
    • +1
    ./threedbeacons/p01308_tdb_resp.txt
2:55 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 TDBeacons fetcher needs a sequence with at least one canonical uniprot accession

Options
    • -3
    • +5
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
  2. … 1 more file in changeset.
Tuesday 14 Sep 2021
2:38 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 move mock query and responses to files

Options
    • -1
    • +350
    ./service/pdb/PDBFTSRestClientTest.java
    • -4
    • +19
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
    • -0
    • +2
    ./threedbeacons/p01308_pdbfts_query.txt
    • -0
    • +2381
    ./threedbeacons/p01308_pdbfts_resp.txt
    • -0
    • +1
    ./threedbeacons/p01308_tdb_resp.txt
  6. … 3 more files in changeset.
12:34 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 allow multiple URL mocks and include P01308 in 3d-beacons mocks

Options
    • -0
    • +1
    ./service/pdb/PDBFTSRestClientTest.java
    • -5
    • +13
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
  3. … 4 more files in changeset.
Friday 10 Sep 2021
1:44 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 update for v1.0 3d-beacons api spec

Options
    • -8
    • +9
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
  2. … 2 more files in changeset.
Wednesday 08 Sep 2021
12:37 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 formatting

Options
    • -47
    • +53
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
12:34 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 integration test verifying mock response is valid for a live server

Options
    • -7
    • +31
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
Monday 06 Sep 2021
2:47 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 mocking for PDBFTS for related query to UniprotFTS mock.

Options
    • -1
    • +1
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
  2. … 3 more files in changeset.
Friday 03 Sep 2021
6:41 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 mocking for testing 3D-Beacons FTS endpoint

Options
    • -0
    • +74
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
  2. … 1 more file in changeset.
Monday 30 Aug 2021
2:44 pm

Jim Procter

Wednesday 25 Aug 2021
6:13 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3929 updated tests for 3db fetcher’s working FTS metadata

Options
    • -7
    • +7
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
    • -8
    • +8
    ./threedbeacons/TDBeaconsPanelTest.java
6:13 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 updated tests for 3db fetcher’s working FTS metadata

Options
    • -7
    • +7
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
    • -8
    • +8
    ./threedbeacons/TDBeaconsPanelTest.java
4:26 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 fixed up the 3d-beacons data columns definitions, tests and client.

Options
    • -9
    • +15
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
  2. … 2 more files in changeset.
4:26 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3929 fixed up the 3d-beacons data columns definitions, tests and client.

Options
    • -9
    • +15
    ./threedbeacons/TDBeaconsFTSRestClientTest.java
  2. … 2 more files in changeset.
4:24 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3929 tidying up PDBFTSRestClient test responses - still one failing external test which expects to raise a server exception

Options
    • -0
    • +1
    ./service/pdb/PDBFTSRestClientTest.java
  2. … 1 more file in changeset.
4:24 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3829 tidying up PDBFTSRestClient test responses - still one failing external test which expects to raise a server exception

Options
    • -0
    • +1
    ./service/pdb/PDBFTSRestClientTest.java
  2. … 1 more file in changeset.
Monday 23 Aug 2021
2:12 pm

Jim Procter

remove debugging printlns

remove debugging printlns

2:12 pm

Jim Procter

aim is normally to avoid creating query-specific data containers on the core query response class

aim is normally to avoid creating query-specific data containers on the core query response class

10:26 am

Jim Procter

? not sure this is correct

? not sure this is correct

10:24 am

Jim Procter

Needs additionally: model_category created sequence_identity uniprot_start uniprot_end resolution coverage qmean_version ? model_version

Needs additionally:
model_category
created
sequence_identity
uniprot_start
uniprot_end
resolution
coverage
qmean_version ?
model_version

10:19 am

Jim Procter