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JAL-3875 test case and patch to verify the query 3d beacons button is shown for proteins with uniprot ids but no canonical accessions

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JAL-3829 tests need to wait for dialog to be closed and background processes to finish before they can check functionality

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JAL-3829 parallel not welcome here

JAL-3829 test flakiness and human flakiness

JAL-3829 more info on test fail - seems to be flaky

JAL-3829 move mock query and responses to files

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    ./structurechooser/StructureChooserQuerySourceTest.java
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JAL-3829 allow multiple URL mocks and include P01308 in 3d-beacons mocks

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    ./structurechooser/StructureChooserQuerySourceTest.java
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JAL-3829 ensure unmock the FTS PDB and TDB clients after mocking for a test

JAL-3829 minimal test of additional TDB filters - not at all robust

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    ./structurechooser/StructureChooserQuerySourceTest.java
JAL-3829 ensure tests use mocked service - proper exception for mocked 400 response

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JAL-3829 patch failing tests and todo for future

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    ./structurechooser/StructureChooserQuerySourceTest.java
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JAL-3829 insert title for structures from PDBe

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    ./structurechooser/StructureChooserQuerySourceTest.java
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JAL-3829 allow client-side selection of structures for a sequence by passing in discovered structures

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    ./structurechooser/StructureChooserQuerySourceTest.java
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JAL-3829 work in progress - look up additional metadata from PDBe for structures discovered via TDBFTS

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    ./structurechooser/StructureChooserQuerySourceTest.java
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JAL-3829 pull out structure chooser query source tests to new class

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    ./structurechooser/StructureChooserQuerySourceTest.java
JAL-3829 JAL-3865 test structure chooser queries to mocked 3D Beacons FTS

JAL-3829 use sequence dependent constructor for structure chooser query engine testing

JAL-3829 refactored FilterOption provider to the StructureChooserQuerySource implementation - implementation now is completely independent of GUI code.

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JAL-3929 3d-beacons structure chooser logic (not yet finished)

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JAL-3829 3d-beacons structure chooser logic (not yet finished)

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JAL-3829 pushed the PDBFTSClient specific code to new ‘StructureChooserQuerySource’ class in preparation for adapting it to query 3d-beacons

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JAL-3929 pushed the PDBFTSClient specific code to new ‘StructureChooserQuerySource’ class in preparation for adapting it to query 3d-beacons

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patch needed for 2.11.2 - JAL-3518 - catch case when no replies are available

patch needed for 2.11.2 - JAL-3518 - catch case when no replies are available

semantics for determining if a PDB file has a SIFTs mapping - could be absorbed into the PDB metadata object

semantics for determining if a PDB file has a SIFTs mapping - could be absorbed into the PDB metadata object

magic logic to recognise which structure database provider client to use - PDB or AlphaFold - ensures metadata and annotation rows are propagates

magic logic to recognise which structure database provider client to use - PDB or AlphaFold - ensures metadata and annotation rows are propagates

Reviewing the alphafold + contact matrix patch for 2.11.2
Reviewing the alphafold + contact matrix patch for 2.11.2
remove debugging printlns

remove debugging printlns

aim is normally to avoid creating query-specific data containers on the core query response class

aim is normally to avoid creating query-specific data containers on the core query response class

? not sure this is correct

? not sure this is correct