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JAL-3066 Fix ambiguous assertEquals casting values to double.

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    • +17
    ./HMMProbabilityDistributionAnalyserTest.java
JAL-3761 listToArray became rangeListToArray

JAL-2994 disable tests for FileUtils path search methods on bamboo

WIP
WIP
Revert "Merge branch 'bug/JAL-3806_mappingCoversSequence' into releases/Release_2_11_1_Branch"

This reverts commit cb628aab46f9027e71b71203b322f96710e09990, reversing

changes made to a40669b2eeb34a6c760b63c172a31a194b456f24.

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JAL-3806 fix and test for one-to-many sequence mapping case

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JAL-3751 second occurrence of bug squashed

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JAL-3761 locateInFrom/To revised with tests; unused methods removed

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JAL-3761 locateInFrom/To revised with tests; unused methods removed

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JAL-3761 debugged and working (but not tidied) locateInFrom2/To2

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JAL-3761 debugged and working (but not tidied) locateInFrom2/To2

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JAL-3761 locateInFrom2 work in progress commit

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JAL-3761 locateInFrom2 work in progress commit

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JAL-3761 unit test for MapList.countPos()

JAL-3761 unit test for MapList.countPos()

JAL-3700 mapped sequence group includes short (or all gapped) sequences

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JAL-3700 JAL-3763 create datasets for test sequences

JAL-3700 JAL-3763 create datasets for test sequences

JAL-3761 failing test, formatting, method renamed

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JAL-3761 failing test, formatting, method renamed

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JAL-3761 failing tests for locateInFrom/To with overlapping ranges

JAL-3761 failing tests for locateInFrom/To with overlapping ranges

JAL-3760 fix tests for changed behaviour

JAL-3760 fix tests for changed behaviour

JAL-3751 only merge strictly contiguous ranges of mappings
JAL-3751 only merge strictly contiguous ranges of mappings
JAL-3751 only merge strictly contiguous ranges of mappings

  1. … 1 more file in changeset.