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JAL-3878 Add getCalcName to AlignCalcWorkerI.

getCalcName() can be used to identify services that run the calculator.

when an alternative calculator (different host or parameters) is created

the old ones sharing the name can be stopped.

  1. … 8 more files in changeset.
JAL-3690 Remove references to old AlignCalcManager.

  1. … 5 more files in changeset.
WIP
WIP
JAL-3690 Introduce AlignCalcManager2 tests.

    • -0
    • +377
    ./AlignCaclManager2Test.java
  1. … 2 more files in changeset.
JAL - 3690 AlignCalc rebuilt - FutureTask-based manager

  1. … 19 more files in changeset.
JAL - 3690 AlignCalc rebuilt - FutureTask-based manager

  1. … 19 more files in changeset.
JAL-3210 Barebones gradle/buildship/eclipse. See README

  1. … 1990 more files in changeset.
JAL-2326 added setup method for JvOptionPane in all Jalveiw test classes to enable JvOptionPane to run non-interactively

  1. … 157 more files in changeset.
JAL-2189 apply license

  1. … 94 more files in changeset.
JAL-2189 format tests

  1. … 53 more files in changeset.
JAL-2068 minimised jalview.gui imports, test for removeAnnotation

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    • +147
    ./AlignCalcManagerTest.java
  1. … 10 more files in changeset.