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JAL-3692 unit test updated for ?gzip download endpoint URL

JAL-3692 unit test updated for ?gzip download endpoint URL

JAL-3692 unit test updated for ?gzip download endpoint URL

changed

changed

Should be ENA Flatfile retrieval failed

Should be ENA Flatfile retrieval failed

JAL-3692: Update ENA endpoint for EMBL/CDS sequence retrieval
JAL-3692: Update ENA endpoint for EMBL/CDS sequence retrieval
JAL-3692 URL tests updated

JAL-3692 URL tests updated

JAL-3210 Barebones gradle/buildship/eclipse. See README

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JAL-2738 copy to spikes/mungo

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JAL-2748 JAL-2745 remove uniprot from EBI fetch client test - no longer used in Uniprot fetcher

JAL-2748 JAL-2745 remove uniprot from EBI fetch client test - no longer used in Uniprot fetcher

JAL-2745 patch tests for https

JAL-2745 patch tests for https

JAL-1950 update constants to DataSourceType and FileFormat enums.

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JAL-2326 added setup method for JvOptionPane in all Jalveiw test classes to enable JvOptionPane to run non-interactively

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JAL-2189 apply license

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JAL-2113 EBIFetchClient refactor / unit tests / remove unused fields and parameters

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    • +113
    ./EBIFetchClientTest.java
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JAL-1950 represent duplicate sequences by their representative in the hit alignment

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JAL-1950 test positioning of posterior probability annotation on hit sequence

JAL-1950 first stab at Hmmer3 JSON parser and alignment decorator

    • -0
    • +89
    ./HmmerJSONProcessTest.java
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