utils

Clone Tools
  • last updated a few seconds ago
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
JAL-3848 update jalview core with slivka classes, example file import and structure view

    • -122
    • +1160
    ./jalviewjs/classlists/jalview.txt
JAL-3848 Update slivka client javajs library.

    • binary
    ./jalviewjs/libjs/slivka-client-site.zip
JAL-3848 j2s 3.2.10-v1 slivka-java-client jslib

    • binary
    ./jalviewjs/libjs/slivka-client-site.zip
JAL-3848 nominal build of slivka 0.8 compatible java client library

    • binary
    ./jalviewjs/libjs/slivka-client-site.zip
WIP
WIP
JAL-3594 Updated the Jalview Develop getdown splashscreen image with Geoff's license free photo

    • binary
    ./channels/develop/images/jalview_develop_getdown_background_error.png
    • binary
    ./channels/develop/images/jalview_develop_getdown_background_initialising.png
JAL-3830 Improved jalview.bat to find either pwsh.exe or powershell.exe, and give better messages to the user

JAL-3830 BAT file wrapper around powershell, so jalview works in command prompt. Added install4j option for installer to add Jalview's bin dir to Path in Windows. Added install4j option to create symlink to bash script to user's local bin (first of ~/bin, ~/.local/bin, ~/local/bin, ~/opt/bin that exists. First two of these usually automatically in PATH).

    • -0
    • +4
    ./getdown/bin/jalview.bat
    • -32
    • +84
    ./install4j/install4j8_template.install4j
  1. … 2 more files in changeset.
JAL-3830 Follow all SymbolicLinks in Windows powershell wrapper

JAL-3830 delete channel.props and channel.propsv when uninstalling

    • -1
    • +11
    ./install4j/install4j8_template.install4j
JAL-3830 Moved wrappers to bin/jalview.* and make a symlink bin/jalview. Install4j script now jalviewg

    • -0
    • +50
    ./getdown/bin/jalview.ps1
    • -0
    • +132
    ./getdown/bin/jalview.sh
    • -23
    • +43
    ./install4j/install4j8_template.install4j
  1. … 2 more files in changeset.
JAL-3594 Making default .jalview_properties file separate. Now .jalview_nonrelease_properties

    • -1
    • +1
    ./channels/default/resources/channel.props
JAL-3830 Allow paths to start with '~'. Make path check more succinct.

JAL-3830 Now using a single universal bash script (jalviewc) for bash in linux, macos, cygwin and WSL. It keeps things together.

    • -27
    • +3
    ./install4j/install4j8_template.install4j
  1. … 2 more files in changeset.
JAL-3830 add the windows bash script to getdown files and install4j installers

    • -3
    • +15
    ./install4j/install4j8_template.install4j
  1. … 2 more files in changeset.
JAL-3830 bash script that works in both cygwin and WSL (Windows Subsystem for Linux)

    • -0
    • +74
    ./getdown/jalviewc-windows
JAL-3830 Delete wrapper scripts and getdown *v files when uninstalling

    • -1
    • +31
    ./install4j/install4j8_template.install4j
JAL-3830 powershell wrapper tested on linux, macos and windows including spaces in paths. This is the way.

JAL-3830 minor fix in powershell wrapper

JAL-3830 powershell follows symlinks as they do exist in NTFS, and of course in linux

JAL-3830 Powershell wrapper now works cross-platform. Who needs bash?!

JAL-3830 Make wrapper scripts executable

    • -1
    • +10
    ./install4j/install4j8_template.install4j
JAL-3830 powershell wrapper tested and fixed

JAL-3830 improved bash scripts. Added powershell script. Needs testing

    • -0
    • +28
    ./getdown/jalviewc.ps1
  1. … 2 more files in changeset.
JAL-3830 unix and macos wrappers. Symbolic link to jalviewc-macos in Contents/MacOS/jalviewc.

    • -0
    • +34
    ./getdown/jalviewc-macos
    • -2
    • +3
    ./install4j/install4j8_template.install4j
  1. … 2 more files in changeset.
JAL-3830 Improved for .app dir name with spaces, e.g. Jalview Local. Tested on mac to be working.

JAL-3830 install4j adds script to Jalview.app/Contents/MacOS/jalview but we need install4j9 to make it executable

    • -0
    • +2
    ./install4j/install4j8_template.install4j
  1. … 2 more files in changeset.
JAL-3830 first draft of wrapper script to go in macOS Jalview.app/Contents/MacOS/jalview

    • -0
    • +31
    ./install4j/macos_jalview
Merge branch 'develop' into task/JAL-3796_notarization

    • -15
    • +1
    ./install4j/install4j8_template.install4j