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JAL-4004 Temporary mechanism to add JalviewJS link for selected versions to hugo website

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JAL-3989 Code tidying, added JVL_HEADER for older versions of Jalview, allow time in release date header

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JAL-4004 Now generating hugo files from help/markdown/...

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    ./hugo/old_task_to_extract_markdown_from_old_releases_html.txt
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JAL-3989 improved parsing and formatting now using flex CSS layout for columns

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JAL-3989 Populate template files for hugo build: archive version files including changes from releases.html, and installers data file

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JAL-3989 moved getdown build dirs to build/website/docroot/getdown/CHANNEL, build/website/docroot/old/VERSION and build/getdown/files, and files for hugo into build/website/hugo/... This is better in multiple ways including collating files needed for the hugo website and website docroot.

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    ./install4j/install4j9_template.install4j
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Merge branch 'task/JAL-3553_improved_install4j_output_txt' into merge/JAL-3978+JAL-3553+develop

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    ./install4j/install4j8_template.install4j
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JAL-3851 merged to develop 2022-03-22

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    ./eclipse/eclipse_run.sh
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JAL-3978 New tasks to build archive 'old' dir with appropriate getdown resources, JVL file and digest

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    ./channels/archive/jalview_archive_getdown_background.png
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    ./channels/archive/jalview_archive_getdown_background.xcf
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    ./channels/archive/jalview_archive_getdown_background_error.png
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    ./channels/archive/jalview_archive_getdown_background_initialising.png
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    ./channels/archive/jalview_archive_getdown_progress_bar.png
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    ./channels/default/resources/channel.props
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    ./channels/develop/resources/channel.props
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    ./channels/old/images/jalview_archive_getdown_background.png
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    ./channels/old/images/jalview_archive_getdown_background.xcf
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    ./channels/old/images/jalview_archive_getdown_background_error.png
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    ./channels/old/images/jalview_archive_getdown_background_initialising.png
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    ./channels/old/images/jalview_archive_getdown_progress_bar.png
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    ./channels/old/images/jalview_logo.png
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    ./channels/release/resources/channel.props
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JAL-3978 task stub and getdown splash screens

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    ./channels/archive/jalview_archive_getdown_background.png
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    ./channels/archive/jalview_archive_getdown_background.xcf
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    ./channels/archive/jalview_archive_getdown_background_error.png
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    ./channels/archive/jalview_archive_getdown_background_initialising.png
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    ./channels/archive/jalview_archive_getdown_progress_bar.png
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JAL-3393 Updated DS_Store files, script and doc

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    ./channels/release/images/jalview_dmg_DS_Store
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JAL-3393 updated DMG DS_Store files

JAL-3393 updated Jalview Test DMG background image

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    ./channels/test-release/images/jalview_test-release_dmg_background.svg
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JAL-3393 improved flexibility of script and updated doc

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JAL-3393 Made an all-in-one script to create the DS_Store from scratch (has to be run on a mac desktop, it incorporates the AppleScript Finder adjustments). Updated docs. Updated the release DMG background image with the script. Changed install4j9 to put the background image as .background/background.png.

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    ./channels/release/images/jalview_dmg_DS_Store
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    ./install4j/install4j9_template.install4j
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    ./install4j/mk_ds_store.sh
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    ./install4j/set_relative_dmg_background_image.applescript
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JAL-3393 Added version number to DMG Volume name. New jalview_dmg_DS_Store and documentation about it

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    ./channels/release/images/jalview_dmg_DS_Store
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    ./install4j/set_relative_dmg_background_image.applescript
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JAL-3796 include entitlements when codesigning for macOS - doesn't actually help :(

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    ./install4j/install4j9_template.install4j
JAL-3962 Added jre/bin and dist folders to the native library path to try and fix the awt.dll problem

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    ./install4j/install4j9_template.install4j
JAL-3130 updated download_jres.sh

JAL-3796 additional steps for notarization

JAL-3553: Create working getdown appbase and jvl file(s) for each old version of Jalview
JAL-3553: Create working getdown appbase and jvl file(s) for each old version of Jalview
JAL-3830 JAL-3420 added new jvl_file to install4j9 template

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    ./install4j/install4j9_template.install4j
new jvl_file svg, png, ico and icns files, and changed references to Jalview-Launch to jvl_file

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    ./install4j/auto_file_associations-i4j8.pl
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    ./install4j/file_associations_auto-Info_plist.xml
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    ./install4j/file_associations_auto-install4j8.xml
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    ./install4j/install4j8_template.install4j
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    ./install4j/jvl_file.icns
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    ./install4j/jvl_file.ico
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    ./install4j/jvl_file.png
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    ./install4j/jvl_file.svg
JAL-3930 Added a customizedId="JALVIEW" to launcher for use by file associations. Better for response.varfile installation of Jalview

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    ./install4j/file_associations_auto-install4j8.xml
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    ./install4j/file_associations_template-install4j8.xml
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    ./install4j/install4j9_template.install4j
JAL-3930 Added a customizedId="JALVIEW" to launcher for use by file associations. Better for response.varfile installation of Jalview

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    ./install4j/file_associations_auto-install4j8.xml
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    ./install4j/file_associations_template-install4j8.xml
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    ./install4j/install4j8_template.install4j
JAL-3594 correct Jalview Develop logo SVG added in [not actually used in application]

JAL-3066 Vastly updated testng libs

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    ./testnglibs/testng-7.4.0-sources.jar
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    ./testnglibs/testng-7.4.0.jar
JAL-3066 Vastly updated testng libs

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    ./testnglibs/testng-7.4.0-sources.jar
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    ./testnglibs/testng-7.4.0.jar