install4j

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JAL-3830 BAT file wrapper around powershell, so jalview works in command prompt. Added install4j option for installer to add Jalview's bin dir to Path in Windows. Added install4j option to create symlink to bash script to user's local bin (first of ~/bin, ~/.local/bin, ~/local/bin, ~/opt/bin that exists. First two of these usually automatically in PATH).

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JAL-3830 delete channel.props and channel.propsv when uninstalling

JAL-3830 Moved wrappers to bin/jalview.* and make a symlink bin/jalview. Install4j script now jalviewg

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JAL-3830 Now using a single universal bash script (jalviewc) for bash in linux, macos, cygwin and WSL. It keeps things together.

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JAL-3830 add the windows bash script to getdown files and install4j installers

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JAL-3830 Delete wrapper scripts and getdown *v files when uninstalling

JAL-3830 Make wrapper scripts executable

JAL-3830 unix and macos wrappers. Symbolic link to jalviewc-macos in Contents/MacOS/jalviewc.

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JAL-3830 Improved for .app dir name with spaces, e.g. Jalview Local. Tested on mac to be working.

JAL-3830 install4j adds script to Jalview.app/Contents/MacOS/jalview but we need install4j9 to make it executable

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JAL-3830 first draft of wrapper script to go in macOS Jalview.app/Contents/MacOS/jalview

Merge branch 'develop' into task/JAL-3796_notarization

JAL-3796 minimal steps for notarization and the entitlements.txt file needed for the codesign tool

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Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch' into task/JAL-3796_notarization_no_uninstaller

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JAL-3805 Smaller DMG Finder windows for all DS_Store files in utils/channels/... . Removed no longer used DS_Store files from utils/install4j.

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JAL-3805 New DS_Store for smaller DMG Finder window

JAL-3805 New DS_Store for smaller DMG Finder window

JAL-3805 Remove Uninstall Old Jalview.app in Release_2_11_1_Branch

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JAL-3805 Remove Uninstall Old Jalview.app in Release_2_11_1_Branch

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JAL-3796 update signature for uninstaller on OSX

JAL-3796 update to Install4j 8.0.10 and add config for code notarization

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JAL-3594 Change main window title

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JAL-3594 DMG fixes

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    ./README-DMG_background_image_creation.md
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JAL-3594 added BG logo. Changed some named Jalviews to app_name property. Added test-release and default channels.

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    ./jalview_dmg_background-NON-RELEASE.png
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    ./jalview_dmg_background_blur_layers-NON-RELEASE.svg
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    ./moved/Jalview-Logo.png
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    ./moved/jalview_logo.icns
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    ./moved/jalview_logo.ico
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JAL-3594 Added rotating logo png

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JAL-3594 Release images and channel properties

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JAL-3594 New way for build.gradle to override properties with channel based properties files. Starting to tidy up some old image files

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    ./DMG_background_image_creation_README.md
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    ./README-DMG_background_image_creation.md
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    ./README-DMG_creation.md
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    ./README_convert_PNG_to_ICNS_and_ICO
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    ./develop/README_convert_PNG_to_ICNS_and_ICO
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JAL-3594 new logos, icons and cosmetics for getdown and install4j

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    ./develop/README_convert_PNG_to_ICNS_and_ICO
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    ./develop/jalview_develop_512x512x32.xcf
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JAL-3594 Different icon/getdown styling when launching jalview built with -PCHANNEL=DEVELOP

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    ./develop/Jalview-Logo.png
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    ./develop/jalview_develop_512x512x32.xcf
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JAL-3594 Different icon/getdown styling when launching jalview built with -PCHANNEL=DEVELOP

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    ./develop/Jalview-Logo.png
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    ./develop/jalview_develop_512x512x32.xcf
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