install4j

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JAL-3830 JAL-3420 added new jvl_file to install4j9 template

new jvl_file svg, png, ico and icns files, and changed references to Jalview-Launch to jvl_file

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    ./file_associations_auto-Info_plist.xml
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    ./file_associations_auto-install4j8.xml
JAL-3930 Added a customizedId="JALVIEW" to launcher for use by file associations. Better for response.varfile installation of Jalview

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    ./file_associations_auto-install4j8.xml
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    ./file_associations_template-install4j8.xml
JAL-3930 Added a customizedId="JALVIEW" to launcher for use by file associations. Better for response.varfile installation of Jalview

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    ./file_associations_auto-install4j8.xml
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    ./file_associations_template-install4j8.xml
JAL-3553 now creating a json file for use on website. It's easier to parse all the info here than on the website!

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JAL-3553 added customized labels for install4j output.txt

JAL-3553 improve the labels in install4j's output.txt and make a versioned filename output-JALVIEW_VERSION.txt

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JAL-3830 forgot to uncheck this

JAL-3830 polished setup app for macos

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JAL-3830 quick fix to installer text

JAL-3830 install4j9 tries to parse and can't cope with the hyphens and filename format of the jre-VERSION-OS-ARCH.tar.gz JRE tar files, so using underscores in symbolic links

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JAL-3830 Added steps for install4j9 to create macOS symbolic link to wrapper script (link) at /Applications/Jalview.app/Contents/MacOS/jalview and to add icon to Dock

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    ./install4j9_template.install4j
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JAL-3594 New Jalview Test logos and .icns/.ico creation helper script

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    ./README-DMG_background_image_creation.md
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    ./README_convert_PNG_to_ICNS_and_ICO
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JAL-3594 Changed logo for Jalview Test

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JAL-1260 Added .gbk to GenBank extensions. Added GenBank extensions to the installer.

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    ./file_associations_auto-Info_plist.xml
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    ./file_associations_auto-install4j8.xml
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JAL-3830 BAT file wrapper around powershell, so jalview works in command prompt. Added install4j option for installer to add Jalview's bin dir to Path in Windows. Added install4j option to create symlink to bash script to user's local bin (first of ~/bin, ~/.local/bin, ~/local/bin, ~/opt/bin that exists. First two of these usually automatically in PATH).

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JAL-3830 delete channel.props and channel.propsv when uninstalling

JAL-3830 Moved wrappers to bin/jalview.* and make a symlink bin/jalview. Install4j script now jalviewg

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JAL-3830 Now using a single universal bash script (jalviewc) for bash in linux, macos, cygwin and WSL. It keeps things together.

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JAL-3830 add the windows bash script to getdown files and install4j installers

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JAL-3830 Delete wrapper scripts and getdown *v files when uninstalling

JAL-3830 Make wrapper scripts executable

JAL-3830 unix and macos wrappers. Symbolic link to jalviewc-macos in Contents/MacOS/jalviewc.

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JAL-3830 Improved for .app dir name with spaces, e.g. Jalview Local. Tested on mac to be working.

JAL-3830 install4j adds script to Jalview.app/Contents/MacOS/jalview but we need install4j9 to make it executable

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JAL-3830 first draft of wrapper script to go in macOS Jalview.app/Contents/MacOS/jalview

Merge branch 'develop' into task/JAL-3796_notarization

JAL-3796 minimal steps for notarization and the entitlements.txt file needed for the codesign tool

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Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch' into task/JAL-3796_notarization_no_uninstaller

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JAL-3805 Smaller DMG Finder windows for all DS_Store files in utils/channels/... . Removed no longer used DS_Store files from utils/install4j.

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