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JAL-3830 first draft of wrapper script to go in macOS Jalview.app/Contents/MacOS/jalview

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    ./install4j/macos_jalview
Merge branch 'develop' into task/JAL-3796_notarization

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    ./install4j/install4j8_template.install4j
JAL-3796 minimal steps for notarization and the entitlements.txt file needed for the codesign tool

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    ./install4j/install4j8_template.install4j
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    ./osx_signing/README
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    ./osx_signing/entitlements.txt
JAL-3594 Allow a channel to use a different preferences file than .jalview_properties, with initial read from .jalview_properties

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    ./channels/default/resources/channel.props
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    ./channels/develop/resources/channel.props
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    ./channels/release/resources/channel.props
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JAL-3521 High quality file icons for jalview associated files, and associated mime-type icon references

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    ./debian/debian/icons/128x128/apps/jalview-icon.png
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    ./debian/debian/icons/16x16/apps/jalview-icon.png
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    ./debian/debian/icons/16x16/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/22x22/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/24x24/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/256x256/apps/jalview-icon.png
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    ./debian/debian/icons/32x32/apps/jalview-icon.png
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    ./debian/debian/icons/32x32/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/48x48/apps/jalview-icon.png
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    ./debian/debian/icons/48x48/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/512x512/apps/jalview-icon.png
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    ./debian/debian/icons/512x512/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/64x64/apps/jalview-icon.png
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    ./debian/debian/jalview-mime.xml
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    ./debian/file_associations_template-shared-mime-info.xml
JAL-3521 Adjusted wrapper shell script and .desktop file to cater for opening a file with or without -open arg

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    ./debian/debian/wrappers/jalview
JAL-3815 default /etc/jalview_properties under utils/debian

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    ./debian/etc/jalview_properties
JAL-3251 debian build using maven, simplified build.gradle not needed

JAL-3521 Moved the debian build.gradle to utils/debian/build.gradle.debian

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    ./debian/build.gradle.debian
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Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch' into task/JAL-3796_notarization_no_uninstaller

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    ./install4j/install4j8_template.install4j
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JAL-3521 Updating file opening marker to %u

JAL-3521 Updating file opening marker to %u

JAL-3521 Debian mime-type and desktop helper files, and script to create them

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    ./debian/debian/jalview-file.png
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    ./debian/debian/jalview-icon.png
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    ./debian/debian/jalview-mailcap
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    ./debian/debian/jalview-mime.xml
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    ./debian/debian/jalview.desktop
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    ./debian/file_associations_template-mailcap.txt
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    ./debian/file_associations_template-shared-mime-info.xml
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    ./debian/mime_types_for_debian.pl
JAL-3521 Debian mime-type and desktop helper files, and script to create them

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    ./debian/debian/jalview-file.png
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    ./debian/debian/jalview-icon.png
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    ./debian/debian/jalview-mailcap
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    ./debian/debian/jalview-mime.xml
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    ./debian/debian/jalview.desktop
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    ./debian/file_associations_template-mailcap.txt
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    ./debian/file_associations_template-shared-mime-info.xml
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    ./debian/mime_types_for_debian.pl
JAL-3805 Smaller DMG Finder windows for all DS_Store files in utils/channels/... . Removed no longer used DS_Store files from utils/install4j.

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    ./channels/release/images/jalview_dmg_DS_Store
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    ./install4j/install4j8_template.install4j
JAL-3805 New DS_Store for smaller DMG Finder window

JAL-3805 New DS_Store for smaller DMG Finder window

JAL-3805 Remove Uninstall Old Jalview.app in Release_2_11_1_Branch

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    ./install4j/Uninstall Old Jalview.scpt
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    ./install4j/install4j8_template.install4j
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JAL-3805 Remove Uninstall Old Jalview.app in Release_2_11_1_Branch

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    ./install4j/Uninstall Old Jalview.scpt
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    ./install4j/install4j8_template.install4j
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JAL-3690 Fix typo in enum name in slivka client.

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    ./jalviewjs/libjs/slivka-client-site.zip
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JAL-3796 update signature for uninstaller on OSX

JAL-3796 update to Install4j 8.0.10 and add config for code notarization

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    ./install4j/install4j8_template.install4j
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JAL-3690 tweak J2S direct DB access registration for jalview, compbio and other sites

JAL-3690 direct access to slivka, compbio, jalview.org and localhost/loopback.

JAL-3690 disable proxy server for JalviewJS

JAL-3594 Adjustments to allow JalviewJS to use ChannelProperties, and new utils/channels dir for jalviewjs and jalviewjs-release

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    ./channels/default/resources/channel.props
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    ./channels/develop/resources/channel.props
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    ./channels/jalviewjs-release
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    ./channels/jalviewjs/channel_gradle.properties
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    ./channels/jalviewjs/images/UoD_banner-28.png
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    ./channels/jalviewjs/images/UoD_banner-32.png
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    ./channels/jalviewjs/images/barton_group-30.png
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    ./channels/jalviewjs/images/barton_group-512.png
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    ./channels/jalviewjs/images/barton_group-62.png
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    ./channels/jalviewjs/images/barton_group-white-512.png
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    ./channels/jalviewjs/images/barton_group-white-62.png
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    ./channels/jalviewjs/images/barton_group-white.svg
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    ./channels/jalviewjs/images/barton_group.svg
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JAL-3690 Let's enable web services (seriously this time)

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    ./jalviewjs/libjs/slivka-client-site.zip
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JAL-3690 Web services and interactive workers somewhat working.

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    ./jalviewjs/libjs/slivka-client-site.zip
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JAL-3594 Better Jalview Develop banner

JAL-3594 Improved About banners for develop and test-release

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    ./channels/develop/images/jalview_develop_banner.xcf