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JAL-3830 BAT file wrapper around powershell, so jalview works in command prompt. Added install4j option for installer to add Jalview's bin dir to Path in Windows. Added install4j option to create symlink to bash script to user's local bin (first of ~/bin, ~/.local/bin, ~/local/bin, ~/opt/bin that exists. First two of these usually automatically in PATH).

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    ./getdown/bin/jalview.bat
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    ./install4j/install4j8_template.install4j
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JAL-3830 Follow all SymbolicLinks in Windows powershell wrapper

JAL-3830 delete channel.props and channel.propsv when uninstalling

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    ./install4j/install4j8_template.install4j
JAL-3830 Moved wrappers to bin/jalview.* and make a symlink bin/jalview. Install4j script now jalviewg

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    ./getdown/bin/jalview.ps1
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    ./getdown/bin/jalview.sh
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    ./install4j/install4j8_template.install4j
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JAL-3594 Making default .jalview_properties file separate. Now .jalview_nonrelease_properties

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    ./channels/default/resources/channel.props
JAL-3830 Allow paths to start with '~'. Make path check more succinct.

JAL-3830 Now using a single universal bash script (jalviewc) for bash in linux, macos, cygwin and WSL. It keeps things together.

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    ./install4j/install4j8_template.install4j
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JAL-3830 add the windows bash script to getdown files and install4j installers

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    ./install4j/install4j8_template.install4j
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JAL-3830 bash script that works in both cygwin and WSL (Windows Subsystem for Linux)

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    ./getdown/jalviewc-windows
JAL-3830 Delete wrapper scripts and getdown *v files when uninstalling

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    ./install4j/install4j8_template.install4j
JAL-3830 powershell wrapper tested on linux, macos and windows including spaces in paths. This is the way.

JAL-3830 minor fix in powershell wrapper

JAL-3830 powershell follows symlinks as they do exist in NTFS, and of course in linux

JAL-3830 Powershell wrapper now works cross-platform. Who needs bash?!

JAL-3830 Make wrapper scripts executable

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    ./install4j/install4j8_template.install4j
JAL-3830 powershell wrapper tested and fixed

JAL-3830 improved bash scripts. Added powershell script. Needs testing

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    ./getdown/jalviewc.ps1
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JAL-3830 unix and macos wrappers. Symbolic link to jalviewc-macos in Contents/MacOS/jalviewc.

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    ./getdown/jalviewc-macos
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    ./install4j/install4j8_template.install4j
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JAL-3830 Improved for .app dir name with spaces, e.g. Jalview Local. Tested on mac to be working.

JAL-3830 install4j adds script to Jalview.app/Contents/MacOS/jalview but we need install4j9 to make it executable

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    ./install4j/install4j8_template.install4j
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JAL-3830 first draft of wrapper script to go in macOS Jalview.app/Contents/MacOS/jalview

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    ./install4j/macos_jalview
Merge branch 'develop' into task/JAL-3796_notarization

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    ./install4j/install4j8_template.install4j
JAL-3796 minimal steps for notarization and the entitlements.txt file needed for the codesign tool

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    ./install4j/install4j8_template.install4j
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    ./osx_signing/README
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    ./osx_signing/entitlements.txt
JAL-3594 Allow a channel to use a different preferences file than .jalview_properties, with initial read from .jalview_properties

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    ./channels/default/resources/channel.props
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    ./channels/develop/resources/channel.props
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    ./channels/release/resources/channel.props
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JAL-3521 High quality file icons for jalview associated files, and associated mime-type icon references

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    ./debian/debian/icons/128x128/apps/jalview-icon.png
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    ./debian/debian/icons/16x16/apps/jalview-icon.png
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    ./debian/debian/icons/16x16/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/22x22/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/24x24/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/256x256/apps/jalview-icon.png
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    ./debian/debian/icons/32x32/apps/jalview-icon.png
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    ./debian/debian/icons/32x32/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/48x48/apps/jalview-icon.png
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    ./debian/debian/icons/48x48/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/512x512/apps/jalview-icon.png
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    ./debian/debian/icons/512x512/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/64x64/apps/jalview-icon.png
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    ./debian/debian/jalview-mime.xml
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    ./debian/file_associations_template-shared-mime-info.xml
JAL-3521 Adjusted wrapper shell script and .desktop file to cater for opening a file with or without -open arg

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    ./debian/debian/wrappers/jalview
JAL-3815 default /etc/jalview_properties under utils/debian

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    ./debian/etc/jalview_properties
JAL-3251 debian build using maven, simplified build.gradle not needed

JAL-3521 Moved the debian build.gradle to utils/debian/build.gradle.debian

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    ./debian/build.gradle.debian
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Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch' into task/JAL-3796_notarization_no_uninstaller

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    ./install4j/install4j8_template.install4j
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