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JAL-3394 remove no longer used files

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    ./install4j/Jalview-Version-Locator.icns
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    ./install4j/Jalview-Version-Locator.ico
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    ./install4j/Jalview-Version-Locator.png
JAL-3449 getdown resilience change to launcher classpath, includes the backup getdown-launcher.jar

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    ./install4j/install4j8_template.install4j
JAL-3227 helper shell scripts for setting up a build environment

JAL-3523 No longer change CWD of getdown when invoked by install4j launcher

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    ./install4j/install4j8_template.install4j
JAL-3447 MSI installer for windows

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    ./install4j/install4j8_template.install4j
JAL-3393 Trying out a beta strand arrow in the DMG background

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    ./install4j/beta-strand2.png
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    ./install4j/jalview_dmg_background.png
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    ./install4j/jalview_dmg_background_blur_layers_beta_strand.png
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    ./install4j/jalview_dmg_background_blur_layers_beta_strand.svg
JAL-3394 Removed libjli.dylib symbolic link from embedded macOS JRE, works in 8 and 11. Preparation for non-linked Uninstall.app in DMG

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    ./install4j/DS_Store_no_link
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    ./install4j/dmg_nolink_install4j8_template.install4j
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    ./install4j/install4j8_template.install4j
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JAL-3394 Variable-ise output folders -- will work better with sub-project/modularised gradle build

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    ./install4j/install4j8_template.install4j
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JAL-3130 Improved locations of AdoptOpenJDK JRE downloads \(locally and on build server\) and helper script download_jres.sh to update them using AdoptOpenJDK API.

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    ./install4j/download_jres.sh
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    ./install4j/install4j8_template.install4j
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JAL-3447 Minor improvement on file association creation

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    ./install4j/auto_file_associations-i4j8.pl
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    ./install4j/file_associations_auto-install4j8.xml
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    ./install4j/file_associations_template-install4j8.xml
JAL-3393 Improved background image, SVG file, and added instructions on how the image is made

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    ./install4j/DMG_background_image_creation_README.md
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    ./install4j/jalview_dmg_background_blur_72dpi.png
JAL-3393 Improved background image, SVG file, and added instructions on how the image is made

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    ./install4j/DMG_background_image_creation_README.md
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    ./install4j/jalview_dmg_background.png
JAL-3393 Improved background image, and generating SVG file

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    ./install4j/jalview_dmg_background-old.png
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    ./install4j/jalview_dmg_background.png
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    ./install4j/jalview_dmg_background_blur.png
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    ./install4j/jalview_dmg_background_blur_layers.svg
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    ./install4j/jalview_dmg_background_layers.svg
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    ./install4j/jalview_dmg_background_pale.png
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    ./install4j/jalview_dmg_background_plain.png
JAL-3447 minor corrections to cif and mmcif file associations

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    ./install4j/auto_file_associations-i4j8.pl
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    ./install4j/file_associations_auto-Info_plist.xml
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    ./install4j/file_associations_auto-install4j8.xml
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    ./install4j/install4j8_template.install4j
JAL-3210 Bringing in improvements to build.gradle

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    ./install4j/file_associations_auto-Info_plist.xml
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    ./install4j/file_associations_auto-install4j8.xml
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    ./install4j/install4j8_template.install4j
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JAL-3394 improvements to the file association progress bar

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    ./install4j/auto_file_associations-i4j8.pl
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    ./install4j/file_associations_auto-install4j8.xml
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    ./install4j/install4j8_template.install4j
JAL-3394 jalviews scheme added

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    ./install4j/auto_file_associations-i4j8.pl
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    ./install4j/install4j8_template.install4j
JAL-3394 file not needed

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    ./install4j/Info_plist_file_associations.xml
JAL-3447 Satisfactory file associations. cif, mcif and pdb now not opened by Jalview by default -- but are associated. In Windows and linux installer, are deselected by default. 'jalview://' as a URL scheme now associated in Windows and macOS.

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    ./install4j/auto_file_associations-i4j8.pl
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    ./install4j/file_associations_auto-Info_plist.xml
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    ./install4j/file_associations_auto-install4j8.xml
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    ./install4j/file_associations_template-Info_plist.xml
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    ./install4j/file_associations_template-install4j8.xml
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    ./install4j/install4j8_template.install4j
JAL-3394 Simplified media output from install4j

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    ./install4j/install4j8_template.install4j
JAL-3449 More whitespace in installer. Tidying

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    ./install4j/auto_file_associations.pl
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    ./install4j/bs_install4j_template.install4j
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    ./install4j/file_associations_auto-install4j.xml
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    ./install4j/file_associations_template-install4j.xml
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    ./install4j/install4j8_template.install4j
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    ./install4j/install4j_template.install4j
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JAL-3449 Fixed Info.plist file insertion. Simplified install4j conf filename

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    ./install4j/install4j8_template.install4j
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JAL-3449 Work in progress improving XML replacements by gradle

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    ./install4j/install4j8_template.install4j
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JAL-3394 Changed most of the token replacement for adding compiler variables

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    ./install4j/install4j8_template.install4j
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JAL-3420 multiple file extensions for the same mime-type now work in unix installer

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    ./install4j/auto_file_associations-i4j8.pl
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    ./install4j/file_associations_auto-install4j8.xml
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    ./install4j/file_associations_template-install4j8.xml
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    ./install4j/install4j8_template.install4j
JAL-3449 install4j version, install4j template version, getdown version now all being reported in Javliew console

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JAL-3393 Improved background image for DMG finder window, and associated files for creating it

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    ./getdown/jalview_logo_background_fade-640x480.xcf
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    ./install4j/install4j8_template.install4j
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    ./install4j/jalview_dmg_background-old.png
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    ./install4j/jalview_dmg_background.png
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    ./install4j/jalview_dmg_background_large.png
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    ./install4j/jalview_dmg_background_layers.pdf
JAL-3449 adding an installer template version. Really an md5 and a commit hash

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    ./install4j/DMG_creation_README.md
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JAL-3449 added an install4j compiler var

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    ./install4j/install4j8_template.install4j
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JAL-3210 Added in the build*xml files for helper tasks

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    ./jalviewjs/buildxml/build-libjs.xml
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    ./jalviewjs/buildxml/build-site.xml
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    ./jalviewjs/buildxml/build.Bob-Windows.xml
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    ./jalviewjs/buildxml/build.xml
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    ./jalviewjs/buildxml/buildcore.xml