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JAL-3830 bash script that works in both cygwin and WSL (Windows Subsystem for Linux)

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    ./getdown/jalviewc-windows
JAL-3830 Delete wrapper scripts and getdown *v files when uninstalling

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    ./install4j/install4j8_template.install4j
JAL-3830 powershell wrapper tested on linux, macos and windows including spaces in paths. This is the way.

JAL-3830 minor fix in powershell wrapper

JAL-3830 powershell follows symlinks as they do exist in NTFS, and of course in linux

JAL-3830 Powershell wrapper now works cross-platform. Who needs bash?!

JAL-3830 Make wrapper scripts executable

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    ./install4j/install4j8_template.install4j
JAL-3830 powershell wrapper tested and fixed

JAL-3830 improved bash scripts. Added powershell script. Needs testing

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    ./getdown/jalviewc.ps1
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JAL-3830 unix and macos wrappers. Symbolic link to jalviewc-macos in Contents/MacOS/jalviewc.

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    ./getdown/jalviewc-macos
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    ./install4j/install4j8_template.install4j
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JAL-3830 Improved for .app dir name with spaces, e.g. Jalview Local. Tested on mac to be working.

JAL-3830 install4j adds script to Jalview.app/Contents/MacOS/jalview but we need install4j9 to make it executable

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    ./install4j/install4j8_template.install4j
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JAL-3830 first draft of wrapper script to go in macOS Jalview.app/Contents/MacOS/jalview

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    ./install4j/macos_jalview
Merge branch 'develop' into task/JAL-3796_notarization

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    ./install4j/install4j8_template.install4j
JAL-3796 minimal steps for notarization and the entitlements.txt file needed for the codesign tool

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    ./install4j/install4j8_template.install4j
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    ./osx_signing/README
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    ./osx_signing/entitlements.txt
JAL-3594 Allow a channel to use a different preferences file than .jalview_properties, with initial read from .jalview_properties

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    ./channels/default/resources/channel.props
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    ./channels/develop/resources/channel.props
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    ./channels/release/resources/channel.props
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JAL-3521 High quality file icons for jalview associated files, and associated mime-type icon references

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    ./debian/debian/icons/128x128/apps/jalview-icon.png
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    ./debian/debian/icons/16x16/apps/jalview-icon.png
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    ./debian/debian/icons/16x16/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/22x22/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/24x24/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/256x256/apps/jalview-icon.png
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    ./debian/debian/icons/32x32/apps/jalview-icon.png
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    ./debian/debian/icons/32x32/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/48x48/apps/jalview-icon.png
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    ./debian/debian/icons/48x48/mimetypes/x-jalview-file.png
    • binary
    ./debian/debian/icons/512x512/apps/jalview-icon.png
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    ./debian/debian/icons/512x512/mimetypes/x-jalview-file.png
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    ./debian/debian/icons/64x64/apps/jalview-icon.png
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    ./debian/debian/jalview-mime.xml
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    ./debian/file_associations_template-shared-mime-info.xml
JAL-3521 Adjusted wrapper shell script and .desktop file to cater for opening a file with or without -open arg

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    ./debian/debian/wrappers/jalview
JAL-3815 default /etc/jalview_properties under utils/debian

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    ./debian/etc/jalview_properties
JAL-3251 debian build using maven, simplified build.gradle not needed

JAL-3521 Moved the debian build.gradle to utils/debian/build.gradle.debian

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    ./debian/build.gradle.debian
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Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch' into task/JAL-3796_notarization_no_uninstaller

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    ./install4j/install4j8_template.install4j
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JAL-3521 Updating file opening marker to %u

JAL-3521 Updating file opening marker to %u

JAL-3521 Debian mime-type and desktop helper files, and script to create them

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    ./debian/debian/jalview-file.png
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    ./debian/debian/jalview-icon.png
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    ./debian/debian/jalview-mailcap
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    ./debian/debian/jalview-mime.xml
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    ./debian/debian/jalview.desktop
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    ./debian/file_associations_template-mailcap.txt
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    ./debian/file_associations_template-shared-mime-info.xml
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    ./debian/mime_types_for_debian.pl
JAL-3521 Debian mime-type and desktop helper files, and script to create them

    • binary
    ./debian/debian/jalview-file.png
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    ./debian/debian/jalview-icon.png
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    • +22
    ./debian/debian/jalview-mailcap
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    • +143
    ./debian/debian/jalview-mime.xml
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    • +13
    ./debian/debian/jalview.desktop
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    ./debian/file_associations_template-mailcap.txt
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    ./debian/file_associations_template-shared-mime-info.xml
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    • +249
    ./debian/mime_types_for_debian.pl
JAL-3805 Smaller DMG Finder windows for all DS_Store files in utils/channels/... . Removed no longer used DS_Store files from utils/install4j.

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    ./channels/release/images/jalview_dmg_DS_Store
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    ./install4j/install4j8_template.install4j
JAL-3805 New DS_Store for smaller DMG Finder window

JAL-3805 New DS_Store for smaller DMG Finder window

JAL-3805 Remove Uninstall Old Jalview.app in Release_2_11_1_Branch

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    ./install4j/Uninstall Old Jalview.scpt
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    ./install4j/install4j8_template.install4j
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